1 | /*
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2 | * FragmentationResultContainer.hpp
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3 | *
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4 | * Created on: Mar 8, 2013
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5 | * Author: heber
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6 | */
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7 |
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8 | #ifndef FRAGMENTATIONRESULTCONTAINER_HPP_
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9 | #define FRAGMENTATIONRESULTCONTAINER_HPP_
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10 |
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11 | // include config.h
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12 | #ifdef HAVE_CONFIG_H
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13 | #include <config.h>
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14 | #endif
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15 |
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16 | #include <boost/serialization/access.hpp>
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17 | #include <boost/serialization/map.hpp>
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18 | #include <boost/serialization/split_member.hpp>
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19 | #include <boost/serialization/version.hpp>
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20 | #include "CodePatterns/Singleton.hpp"
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21 |
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22 | #include <boost/filesystem/path.hpp>
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23 | #include <map>
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24 |
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25 | #include "CodePatterns/Observer/Observable.hpp"
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26 |
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27 | #ifdef HAVE_JOBMARKET
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28 | #include "JobMarket/types.hpp"
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29 | #else
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30 | typedef size_t JobId_t;
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31 | #endif
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32 |
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33 | #include "Fragmentation/EdgesPerFragment.hpp"
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34 | #include "Fragmentation/KeySetsContainer.hpp"
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35 | #include "Fragmentation/Summation/IndexSet.hpp"
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36 | #include "Fragmentation/Summation/Containers/FragmentationShortRangeResults.hpp"
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37 | #include "Fragmentation/Summation/Containers/MPQCData.hpp"
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38 | #include "Fragmentation/Summation/Containers/MPQCDataMap.hpp"
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39 | #if defined(HAVE_JOBMARKET) && defined(HAVE_VMG)
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40 | #include "Fragmentation/Summation/Containers/VMGData.hpp"
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41 | #endif
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42 |
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43 | /** This class stores results from lengthy fragmentation calculations, e.g.
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44 | * coming out of FragmentationAutomationAction.
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45 | *
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46 | * The idea is that we can play around with results without having to recalculate
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47 | * results in between. Hence, we place results into this container which we may
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48 | * full serialize.
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49 | */
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50 | class FragmentationResultContainer :
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51 | public Singleton<FragmentationResultContainer>,
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52 | public Observable
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53 | {
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54 | //!> Singleton patterns needs access to private cstor/dtor.
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55 | friend class Singleton<FragmentationResultContainer>;
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56 | private:
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57 | FragmentationResultContainer() :
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58 | Observable("FragmentationResultContainer"),
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59 | ResultsType(BothRanges)
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60 | {}
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61 | ~FragmentationResultContainer() {}
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62 |
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63 | public:
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64 | //!> typedef for short range data container
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65 | typedef std::map<JobId_t, MPQCData> shortrangedata_t;
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66 | //!> use FragmentJobQueue's typedef here
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67 | typedef FragmentationEdges::edges_per_fragment_t edges_per_fragment_t;
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68 | #if defined(HAVE_JOBMARKET) && defined(HAVE_VMG)
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69 | //!> typedef for long range data container
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70 | typedef std::map<JobId_t, VMGData> longrangedata_t;
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71 | #endif
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72 |
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73 | #if defined(HAVE_JOBMARKET) && defined(HAVE_VMG)
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74 | /** Adds a a set of both short and long range results.
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75 | *
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76 | * Adds all the containers to the ones present in this instance.
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77 | *
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78 | * \param _keysets
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79 | * \param _forcekeysetskeysets
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80 | * \param _edges_per_fragment
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81 | * \param _shortrangedata
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82 | * \param _longrangedata
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83 | */
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84 | void addFullResults(
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85 | const KeySetsContainer &_keysets,
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86 | const KeySetsContainer &_forcekeysets,
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87 | const edges_per_fragment_t &_edges_per_fragment,
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88 | const shortrangedata_t &_shortrangedata,
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89 | const longrangedata_t &_longrangedata
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90 | );
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91 | #endif
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92 |
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93 | /** Adds a a set of short range results only.
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94 | *
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95 | * Adds all the containers to the ones present in this instance.
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96 | *
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97 | * \param _keysets
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98 | * \param _forcekeysets
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99 | * \param _edges_per_fragment
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100 | * \param _shortrangedata
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101 | */
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102 | void addShortRangeResults(
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103 | const KeySetsContainer &_keysets,
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104 | const KeySetsContainer &_forcekeysets,
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105 | const edges_per_fragment_t &_edges_per_fragment,
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106 | const shortrangedata_t &_shortrangedata
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107 | );
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108 |
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109 | /** Adds a a set of summed short range results.
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110 | *
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111 | * Adds all the containers to the ones present in this instance.
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112 | *
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113 | * \param _summedshortrange energy results per index set
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114 | */
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115 | void addShortRangeSummedResults(
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116 | const FragmentationShortRangeResults::summedshortrange_t &_summedshortrange
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117 | );
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118 |
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119 | /** Adds given cycles to internal keyset list.
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120 | *
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121 | * \param _cycles keysets of cycles to add
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122 | */
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123 | void addCycles(const KeySetsContainer &_cycles)
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124 | { cycles.insert(_cycles); }
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125 |
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126 | /** Clears all internal containers.
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127 | *
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128 | * \note Also resets ResultsType.
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129 | */
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130 | void clear()
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131 | {
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132 | OBSERVE;
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133 | keysets.clear();
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134 | forcekeysets.clear();
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135 | cycles.clear();
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136 | shortrangedata.clear();
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137 | summedshortrange.clear();
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138 | edges_per_fragment.clear();
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139 | #if defined(HAVE_JOBMARKET) && defined(HAVE_VMG)
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140 | longrangedata.clear();
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141 | #endif
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142 | ResultsType = BothRanges;
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143 | }
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144 |
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145 | const KeySetsContainer &getKeySets() const { return keysets; }
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146 | const KeySetsContainer &getCycles() const { return cycles; }
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147 | const KeySetsContainer &getForceKeySets() const { return forcekeysets; }
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148 | const shortrangedata_t& getShortRangeResults() const { return shortrangedata; }
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149 | const FragmentationShortRangeResults::summedshortrange_t& getShortRangeSummedResults() const
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150 | { return summedshortrange; }
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151 | const edges_per_fragment_t& getEdgesPerFragment() const
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152 | { return edges_per_fragment; }
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153 | #if defined(HAVE_JOBMARKET) && defined(HAVE_VMG)
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154 | const longrangedata_t& getLongRangeResults() const;
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155 | #endif
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156 | bool areFullRangeResultsPresent() const { return (ResultsType == BothRanges); }
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157 |
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158 | private:
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159 | //!> indicates whether we contain short range only or both results
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160 | enum ResultsType_t {
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161 | ShortRangeOnly,
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162 | BothRanges,
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163 | } ResultsType;
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164 |
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165 | //!> container for all KeySet's without hydrogens to the jobs
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166 | KeySetsContainer keysets;
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167 | //!> container for all KeySet's with all except saturation hydrogen to the jobs
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168 | KeySetsContainer forcekeysets;
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169 | //!> container for all short-range results
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170 | std::map<JobId_t, MPQCData> shortrangedata;
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171 | //! container of all cycle keysets
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172 | KeySetsContainer cycles;
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173 | //!> container for summed up results per index set
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174 | FragmentationShortRangeResults::summedshortrange_t summedshortrange;
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175 | //!> container for the edge set per index set (starting at 0)
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176 | edges_per_fragment_t edges_per_fragment;
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177 |
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178 | #if defined(HAVE_JOBMARKET) && defined(HAVE_VMG)
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179 | //!> container for all long-range results
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180 | std::map<JobId_t, VMGData> longrangedata;
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181 | #endif
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182 |
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183 | friend class boost::serialization::access;
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184 | // serialization
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185 | template <typename Archive>
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186 | void load(Archive& ar, const unsigned int version)
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187 | {
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188 | OBSERVE;
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189 | ar & ResultsType;
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190 | ar & keysets;
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191 | ar & forcekeysets;
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192 | ar & shortrangedata;
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193 | if (version > 0)
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194 | ar & cycles;
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195 | if (version > 1)
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196 | ar & summedshortrange;
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197 | if (version > 2)
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198 | ar & edges_per_fragment;
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199 | #if defined(HAVE_JOBMARKET) && defined(HAVE_VMG)
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200 | ar & longrangedata;
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201 | #endif
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202 | }
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203 | template <typename Archive>
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204 | void save(Archive& ar, const unsigned int version) const
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205 | {
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206 | ar & ResultsType;
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207 | ar & keysets;
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208 | ar & forcekeysets;
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209 | ar & shortrangedata;
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210 | if (version > 0)
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211 | ar & cycles;
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212 | if (version > 1)
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213 | ar & summedshortrange;
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214 | if (version > 2)
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215 | ar & edges_per_fragment;
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216 | #if defined(HAVE_JOBMARKET) && defined(HAVE_VMG)
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217 | ar & longrangedata;
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218 | #endif
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219 | }
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220 | BOOST_SERIALIZATION_SPLIT_MEMBER()
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221 | };
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222 |
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223 | // version for serialized information associated to FragmentationResultContainer
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224 | BOOST_CLASS_VERSION(FragmentationResultContainer, 3)
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225 |
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226 | #endif /* FRAGMENTATIONRESULTCONTAINER_HPP_ */
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