source: src/Fragmentation/Makefile.am@ 336da8

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_StructOpt_integration_tests Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion GeometryObjects Gui_displays_atomic_force_velocity IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks RotateToPrincipalAxisSystem_UndoRedo StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps Ubuntu_1604_changes stable
Last change on this file since 336da8 was 6393ff, checked in by Frederik Heber <heber@…>, 8 years ago

Added getConnections() to SphericalPointDistribution.

  • we use tesselation in order to extract the connection information between nearest neighboring points from the BoundaryLines of the tesselation. The triangles are ideal as they assure that no point lies within a triangle, hence all these points may be safely combined.
  • functions reside in extra module as with get().
  • added extensive unit tests.
  • Property mode set to 100644
File size: 6.3 KB
Line 
1# PLEASE adhere to the alphabetical ordering in this Makefile!
2# Also indentation by a single tab
3
4FRAGMENTATIONSOURCE = \
5 Fragmentation/Exporters/ExportGraph_ToAtomFragments.cpp \
6 Fragmentation/Exporters/ExportGraph_ToFiles.cpp \
7 Fragmentation/Exporters/ExportGraph_ToJobs.cpp \
8 Fragmentation/Exporters/ExportGraph.cpp \
9 Fragmentation/Exporters/HydrogenPool.cpp \
10 Fragmentation/Exporters/SaturatedBond.cpp \
11 Fragmentation/Exporters/SaturatedFragment.cpp \
12 Fragmentation/Exporters/SaturationDistanceMaximizer.cpp \
13 Fragmentation/Exporters/SphericalPointDistribution.cpp \
14 Fragmentation/Exporters/SphericalPointDistribution_getConnections.cpp \
15 Fragmentation/Exporters/SphericalPointDistribution_getPoints.cpp \
16 Fragmentation/Homology/AtomFragmentsMap.cpp \
17 Fragmentation/Homology/FragmentEdge.cpp \
18 Fragmentation/Homology/FragmentNode.cpp \
19 Fragmentation/Homology/HomologyContainer.cpp \
20 Fragmentation/Homology/HomologyGraph.cpp \
21 Fragmentation/AdaptivityMap.cpp \
22 Fragmentation/BondsPerShortestPath.cpp \
23 Fragmentation/EnergyMatrix.cpp \
24 Fragmentation/ForceMatrix.cpp \
25 Fragmentation/Fragmentation.cpp \
26 Fragmentation/fragmentation_helpers.cpp \
27 Fragmentation/Graph.cpp \
28 Fragmentation/helpers.cpp \
29 Fragmentation/HessianMatrix.cpp \
30 Fragmentation/Interfragmenter.cpp \
31 Fragmentation/KeySet.cpp \
32 Fragmentation/MatrixContainer.cpp \
33 Fragmentation/PowerSetGenerator.cpp \
34 Fragmentation/SortIndex.cpp \
35 Fragmentation/UniqueFragments.cpp
36
37FRAGMENTATIONHEADER = \
38 Fragmentation/Exporters/ExportGraph_ToAtomFragments.hpp \
39 Fragmentation/Exporters/ExportGraph_ToFiles.hpp \
40 Fragmentation/Exporters/ExportGraph_ToJobs.hpp \
41 Fragmentation/Exporters/ExportGraph.hpp \
42 Fragmentation/Exporters/HydrogenPool.hpp \
43 Fragmentation/Exporters/SaturatedBond.hpp \
44 Fragmentation/Exporters/SaturatedFragment.hpp \
45 Fragmentation/Exporters/SaturationDistanceMaximizer.hpp \
46 Fragmentation/Exporters/SphericalPointDistribution.hpp \
47 Fragmentation/Homology/AtomFragmentsMap.hpp \
48 Fragmentation/Homology/FragmentEdge.hpp \
49 Fragmentation/Homology/FragmentNode.hpp \
50 Fragmentation/Homology/HomologyContainer.hpp \
51 Fragmentation/Homology/HomologyGraph.hpp \
52 Fragmentation/AdaptivityMap.hpp \
53 Fragmentation/AtomMask.hpp \
54 Fragmentation/BondsPerShortestPath.hpp \
55 Fragmentation/defs.hpp \
56 Fragmentation/EnergyMatrix.hpp \
57 Fragmentation/ForceMatrix.hpp \
58 Fragmentation/Fragmentation.hpp \
59 Fragmentation/fragmentation_helpers.hpp \
60 Fragmentation/Graph.hpp \
61 Fragmentation/helpers.cpp \
62 Fragmentation/helpers.hpp \
63 Fragmentation/HessianMatrix.hpp \
64 Fragmentation/HydrogenSaturation_enum.hpp \
65 Fragmentation/Interfragmenter.hpp \
66 Fragmentation/KeySet.hpp \
67 Fragmentation/MatrixContainer.hpp \
68 Fragmentation/Mask.hpp \
69 Fragmentation/MoleculeMask.hpp \
70 Fragmentation/PowerSetGenerator.hpp \
71 Fragmentation/SortIndex.hpp \
72 Fragmentation/UniqueFragments.hpp
73
74lib_LTLIBRARIES += \
75 libMolecuilderFragmentation_KeysetsContainer.la
76noinst_LTLIBRARIES += \
77 libMolecuilderFragmentation.la \
78 libMolecuilderFragmentation_getFromKeyset.la \
79 libMolecuilderFragmentation_getFromKeysetStub.la
80libMolecuilderFragmentation_la_includedir = $(includedir)/MoleCuilder/
81libMolecuilderFragmentation_KeysetsContainer_la_includedir = $(includedir)/MoleCuilder/
82libMolecuilderFragmentation_getFromKeyset_la_includedir = $(includedir)/MoleCuilder/
83libMolecuilderFragmentation_getFromKeysetStub_la_includedir = $(includedir)/MoleCuilder/
84libMolecuilderFragmentation_la_CPPFLAGS = $(AM_CPPFLAGS)
85libMolecuilderFragmentation_la_LDFLAGS = $(AM_LDFLAGS)
86libMolecuilderFragmentation_KeysetsContainer_la_LIBADD = \
87 $(CodePatterns_LIBS)
88libMolecuilderFragmentation_la_LIBADD =
89if CONDJOBMARKET
90libMolecuilderFragmentation_la_CPPFLAGS += ${JobMarket_CFLAGS}
91libMolecuilderFragmentation_la_LDFLAGS += $(JobMarket_LDFLAGS)
92libMolecuilderFragmentation_la_LIBADD += $(JobMarket_LIBS)
93endif
94
95nobase_libMolecuilderFragmentation_la_include_HEADERS = ${FRAGMENTATIONHEADER}
96nobase_libMolecuilderFragmentation_KeysetsContainer_la_include_HEADERS = \
97 Fragmentation/KeySetsContainer.hpp \
98 Fragmentation/parseKeySetFile.hpp
99
100## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
101## target. Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
102## will therefore be treated as if it were literally part of the target name,
103## and the variable name derived from that.
104## The file extension .cc is recognized by Automake, and makes it produce
105## rules which invoke the C++ compiler to produce a libtool object file (.lo)
106## from each source file. Note that it is not necessary to list header files
107## which are already listed elsewhere in a _HEADERS variable assignment.
108libMolecuilderFragmentation_la_SOURCES = ${FRAGMENTATIONSOURCE}
109libMolecuilderFragmentation_KeysetsContainer_la_SOURCES = \
110 Fragmentation/KeySetsContainer.cpp \
111 Fragmentation/parseKeySetFile.cpp
112libMolecuilderFragmentation_getFromKeyset_la_SOURCES = \
113 Fragmentation/Homology/HomologyGraph_getFromKeyset.cpp
114libMolecuilderFragmentation_getFromKeysetStub_la_SOURCES = \
115 Fragmentation/Homology/HomologyGraph_getFromKeysetStub.cpp
116
117## Instruct libtool to include ABI version information in the generated shared
118## library file (.so). The library ABI version is defined in configure.ac, so
119## that all version information is kept in one place.
120libMolecuilderFragmentation_KeysetsContainer_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
121
122## The generated configuration header is installed in its own subdirectory of
123## $(libdir). The reason for this is that the configuration information put
124## into this header file describes the target platform the installed library
125## has been built for. Thus the file must not be installed into a location
126## intended for architecture-independent files, as defined by the Filesystem
127## Hierarchy Standard (FHS).
128## The nodist_ prefix instructs Automake to not generate rules for including
129## the listed files in the distribution on 'make dist'. Files that are listed
130## in _HEADERS variables are normally included in the distribution, but the
131## configuration header file is generated at configure time and should not be
132## shipped with the source tarball.
133libMolecuilderFragmentation_KeysetsContainer_libincludedir = $(libdir)/MoleCuilder/include
134nodist_libMolecuilderFragmentation_KeysetsContainer_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
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