| [7b6b21f] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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|  | 4 | * Copyright (C)  2012 University of Bonn. All rights reserved. | 
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|  | 5 | * Please see the COPYING file or "Copyright notice" in builder.cpp for details. | 
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|  | 6 | * | 
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|  | 7 | * | 
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|  | 8 | *   This file is part of MoleCuilder. | 
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|  | 9 | * | 
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|  | 10 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
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|  | 11 | *    it under the terms of the GNU General Public License as published by | 
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|  | 12 | *    the Free Software Foundation, either version 2 of the License, or | 
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|  | 13 | *    (at your option) any later version. | 
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|  | 14 | * | 
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|  | 15 | *    MoleCuilder is distributed in the hope that it will be useful, | 
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|  | 16 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
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|  | 17 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
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|  | 18 | *    GNU General Public License for more details. | 
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|  | 19 | * | 
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|  | 20 | *    You should have received a copy of the GNU General Public License | 
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|  | 21 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
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|  | 22 | */ | 
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|  | 23 |  | 
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|  | 24 | /* | 
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|  | 25 | * HomologyGraph.cpp | 
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|  | 26 | * | 
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|  | 27 | *  Created on: Sep 24, 2012 | 
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|  | 28 | *      Author: heber | 
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|  | 29 | */ | 
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|  | 30 |  | 
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|  | 31 |  | 
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|  | 32 | // include config.h | 
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|  | 33 | #ifdef HAVE_CONFIG_H | 
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|  | 34 | #include <config.h> | 
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|  | 35 | #endif | 
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|  | 36 |  | 
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| [67db80] | 37 | // include headers that implement a archive in simple text format | 
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|  | 38 | // otherwise BOOST_CLASS_EXPORT_IMPLEMENT has no effect | 
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|  | 39 | #include <boost/archive/text_oarchive.hpp> | 
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|  | 40 | #include <boost/archive/text_iarchive.hpp> | 
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|  | 41 |  | 
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| [7b6b21f] | 42 | #include "CodePatterns/MemDebug.hpp" | 
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|  | 43 |  | 
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|  | 44 | #include "HomologyGraph.hpp" | 
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|  | 45 |  | 
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| [54a561] | 46 | #include <iostream> | 
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| [77b350] | 47 |  | 
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|  | 48 | HomologyGraph::HomologyGraph(const KeySet &keyset) : | 
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|  | 49 | nodes(detail::getNodesFromKeySet(keyset)), | 
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|  | 50 | edges(detail::getEdgesFromKeySet(keyset)) | 
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|  | 51 | {} | 
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|  | 52 |  | 
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| [372c912] | 53 | HomologyGraph::HomologyGraph(const IndexSet &index) : | 
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|  | 54 | nodes(detail::getNodesFromIndexSet(index)), | 
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|  | 55 | edges(detail::getEdgesFromIndexSet(index)) | 
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|  | 56 | {} | 
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|  | 57 |  | 
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| [7b6b21f] | 58 | bool HomologyGraph::operator<(const HomologyGraph &graph) const | 
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|  | 59 | { | 
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|  | 60 | if (nodes < graph.nodes) { | 
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|  | 61 | return true; | 
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|  | 62 | } else if (nodes > graph.nodes) { | 
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|  | 63 | return false; | 
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|  | 64 | } else { | 
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|  | 65 | if (edges < graph.edges) | 
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|  | 66 | return true; | 
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|  | 67 | else | 
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|  | 68 | return false; | 
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|  | 69 | } | 
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|  | 70 | } | 
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|  | 71 |  | 
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|  | 72 | bool HomologyGraph::operator>(const HomologyGraph &graph) const | 
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|  | 73 | { | 
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|  | 74 | if (nodes > graph.nodes) { | 
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|  | 75 | return true; | 
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|  | 76 | } else if (nodes < graph.nodes) { | 
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|  | 77 | return false; | 
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|  | 78 | } else { | 
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|  | 79 | if (edges > graph.edges) | 
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|  | 80 | return true; | 
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|  | 81 | else | 
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|  | 82 | return false; | 
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|  | 83 | } | 
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|  | 84 | } | 
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|  | 85 |  | 
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|  | 86 | bool HomologyGraph::operator==(const HomologyGraph &graph) const | 
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|  | 87 | { | 
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|  | 88 | if (nodes != graph.nodes) { | 
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|  | 89 | return false; | 
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|  | 90 | } else { | 
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|  | 91 | return (edges == graph.edges); | 
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|  | 92 | } | 
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|  | 93 | } | 
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|  | 94 |  | 
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|  | 95 | HomologyGraph& HomologyGraph::operator=(const HomologyGraph &graph) | 
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|  | 96 | { | 
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|  | 97 | // self-assignment check | 
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|  | 98 | if (this != &graph) { | 
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|  | 99 | const_cast<nodes_t &>(nodes) = graph.nodes; | 
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|  | 100 | const_cast<edges_t &>(edges) = graph.edges; | 
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|  | 101 | } | 
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|  | 102 | return *this; | 
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|  | 103 | } | 
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| [54a561] | 104 |  | 
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| [e920d3d] | 105 | bool HomologyGraph::hasTimesAtomicNumber(const size_t _number, const size_t _times) const | 
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|  | 106 | { | 
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|  | 107 | size_t count = 0; | 
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|  | 108 | for (nodes_t::const_iterator iter = nodes.begin(); iter != nodes.end(); ++iter) { | 
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|  | 109 | if ((iter->first).getAtomicNumber() == _number) | 
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|  | 110 | count += iter->second; | 
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|  | 111 | } | 
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|  | 112 | return (count == _times); | 
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|  | 113 | } | 
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|  | 114 |  | 
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| [54a561] | 115 | std::ostream& operator<<(std::ostream& ost, const HomologyGraph &graph) | 
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|  | 116 | { | 
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|  | 117 | for (HomologyGraph::nodes_t::const_iterator nodeiter = graph.nodes.begin(); | 
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|  | 118 | nodeiter != graph.nodes.end(); | 
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|  | 119 | ++nodeiter) | 
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| [28e203] | 120 | ost << nodeiter->second << "x " << nodeiter->first << ", "; | 
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| [54a561] | 121 | for (HomologyGraph::edges_t::const_iterator edgeiter = graph.edges.begin(); | 
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|  | 122 | edgeiter != graph.edges.end(); | 
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|  | 123 | ++edgeiter) | 
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| [28e203] | 124 | ost << edgeiter->second << "x " << edgeiter->first << ", "; | 
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| [54a561] | 125 | return ost; | 
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|  | 126 | } | 
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|  | 127 |  | 
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| [67db80] | 128 | // we need to explicitly instantiate the serialization functions | 
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|  | 129 | BOOST_CLASS_EXPORT_IMPLEMENT(HomologyGraph) | 
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|  | 130 |  | 
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