Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since a2295a was 065574, checked in by Frederik Heber <heber@…>, 12 years ago |
Added level and near_field_cells as options to FragmentationAutomationAction.
- new options are grid-level and near-field-cells that allow setting the
precision of the electron charge density sampling (and potentil calculation)
and the smearing out of nuclei charge density on the command-line.
|
-
Property mode
set to
100644
|
File size:
1.4 KB
|
Line | |
---|
1 | /*
|
---|
2 | * MPQCFragmentController.hpp
|
---|
3 | *
|
---|
4 | * Created on: Aug 27, 2012
|
---|
5 | * Author: heber
|
---|
6 | */
|
---|
7 |
|
---|
8 | #ifndef MPQCFRAGMENTCONTROLLER_HPP_
|
---|
9 | #define MPQCFRAGMENTCONTROLLER_HPP_
|
---|
10 |
|
---|
11 |
|
---|
12 | // include config.h
|
---|
13 | #ifdef HAVE_CONFIG_H
|
---|
14 | #include <config.h>
|
---|
15 | #endif
|
---|
16 |
|
---|
17 | #include "Fragmentation/Automation/SpecificFragmentController.hpp"
|
---|
18 |
|
---|
19 | #include <boost/filesystem/path.hpp>
|
---|
20 |
|
---|
21 | #include <fstream>
|
---|
22 | #include <string>
|
---|
23 | #include <vector>
|
---|
24 |
|
---|
25 | #include "JobMarket/JobId.hpp"
|
---|
26 |
|
---|
27 | #include "Jobs/MPQCData.hpp"
|
---|
28 |
|
---|
29 | /** This class uses SpecificFragmentController with functions to add specificly
|
---|
30 | * VMGJobs.
|
---|
31 | */
|
---|
32 | class MPQCFragmentController : public SpecificFragmentController
|
---|
33 | {
|
---|
34 | public:
|
---|
35 | MPQCFragmentController(boost::asio::io_service &io_service) :
|
---|
36 | SpecificFragmentController(io_service),
|
---|
37 | level(5)
|
---|
38 | {}
|
---|
39 | virtual ~MPQCFragmentController()
|
---|
40 | {}
|
---|
41 |
|
---|
42 | bool addJobsFromFiles(
|
---|
43 | const std::string &executable,
|
---|
44 | const std::vector< boost::filesystem::path > &jobfiles);
|
---|
45 | void getResults(std::map<JobId_t, MPQCData> &fragmentData) {
|
---|
46 | SpecificFragmentController::getResults<MPQCData>(fragmentData);
|
---|
47 | }
|
---|
48 |
|
---|
49 | void setLevel(const size_t _level) { level = _level; }
|
---|
50 |
|
---|
51 | private:
|
---|
52 | void parsejob(
|
---|
53 | std::vector<FragmentJob::ptr> &jobs,
|
---|
54 | const std::string &command,
|
---|
55 | const std::string &filename,
|
---|
56 | const JobId_t nextid);
|
---|
57 |
|
---|
58 | private:
|
---|
59 | //!> resolution of sampled electron density as \f$2^{\text{level}}\f$
|
---|
60 | size_t level;
|
---|
61 | };
|
---|
62 |
|
---|
63 |
|
---|
64 | #endif /* MPQCFRAGMENTCONTROLLER_HPP_ */
|
---|
Note:
See
TracBrowser
for help on using the repository browser.