source: src/Fragmentation/Automation/MPQCFragmentController.hpp@ a2295a

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since a2295a was 065574, checked in by Frederik Heber <heber@…>, 12 years ago

Added level and near_field_cells as options to FragmentationAutomationAction.

  • new options are grid-level and near-field-cells that allow setting the precision of the electron charge density sampling (and potentil calculation) and the smearing out of nuclei charge density on the command-line.
  • Property mode set to 100644
File size: 1.4 KB
Line 
1/*
2 * MPQCFragmentController.hpp
3 *
4 * Created on: Aug 27, 2012
5 * Author: heber
6 */
7
8#ifndef MPQCFRAGMENTCONTROLLER_HPP_
9#define MPQCFRAGMENTCONTROLLER_HPP_
10
11
12// include config.h
13#ifdef HAVE_CONFIG_H
14#include <config.h>
15#endif
16
17#include "Fragmentation/Automation/SpecificFragmentController.hpp"
18
19#include <boost/filesystem/path.hpp>
20
21#include <fstream>
22#include <string>
23#include <vector>
24
25#include "JobMarket/JobId.hpp"
26
27#include "Jobs/MPQCData.hpp"
28
29/** This class uses SpecificFragmentController with functions to add specificly
30 * VMGJobs.
31 */
32class MPQCFragmentController : public SpecificFragmentController
33{
34public:
35 MPQCFragmentController(boost::asio::io_service &io_service) :
36 SpecificFragmentController(io_service),
37 level(5)
38 {}
39 virtual ~MPQCFragmentController()
40 {}
41
42 bool addJobsFromFiles(
43 const std::string &executable,
44 const std::vector< boost::filesystem::path > &jobfiles);
45 void getResults(std::map<JobId_t, MPQCData> &fragmentData) {
46 SpecificFragmentController::getResults<MPQCData>(fragmentData);
47 }
48
49 void setLevel(const size_t _level) { level = _level; }
50
51private:
52 void parsejob(
53 std::vector<FragmentJob::ptr> &jobs,
54 const std::string &command,
55 const std::string &filename,
56 const JobId_t nextid);
57
58private:
59 //!> resolution of sampled electron density as \f$2^{\text{level}}\f$
60 size_t level;
61};
62
63
64#endif /* MPQCFRAGMENTCONTROLLER_HPP_ */
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