/*
 * AtomMask.hpp
 *
 *  Created on: Sep 7, 2012
 *      Author: heber
 */

#ifndef ATOMMASK_HPP_
#define ATOMMASK_HPP_


// include config.h
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif

#include "Fragmentation/Mask.hpp"
#include "types.hpp"

#include <vector>

/** AtomMask is a filter for a atomic ids. The bit is either true or false.
 *
 */
struct AtomMask_t : public Mask_t<atomId_t>
{
  typedef std::vector<atomId_t> atoms_t;
  AtomMask_t(const atoms_t &atoms) {
    for (atoms_t::const_iterator iter = atoms.begin();
        iter != atoms.end(); ++iter)
      setTrue(*iter);
  }

};

#endif /* ATOMMASK_HPP_ */