source: src/Filling/Preparators/ShapeSurfaceFillerPreparator.cpp@ 70f2a1

Action_Thermostats Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_StructOpt_integration_tests AutomationFragmentation_failures Candidate_v1.6.1 ChemicalSpaceEvaluator Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph Fix_Verbose_Codepatterns ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion Gui_displays_atomic_force_velocity JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool PythonUI_with_named_parameters Recreated_GuiChecks StoppableMakroAction TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps
Last change on this file since 70f2a1 was 9eb71b3, checked in by Frederik Heber <frederik.heber@…>, 8 years ago

Commented out MemDebug include and Memory::ignore.

  • MemDebug clashes with various allocation operators that use a specific placement in memory. It is so far not possible to wrap new/delete fully. Hence, we stop this effort which so far has forced us to put ever more includes (with clashes) into MemDebug and thereby bloat compilation time.
  • MemDebug does not add that much usefulness which is not also provided by valgrind.
  • Property mode set to 100644
File size: 2.5 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2014 Frederik Heber. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * ShapeSurfaceFillerPreparator.cpp
25 *
26 * Created on: Sep 3, 2014
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35//#include "CodePatterns/MemDebug.hpp"
36
37#include "ShapeSurfaceFillerPreparator.hpp"
38
39#include <boost/bind.hpp>
40#include <boost/function.hpp>
41
42#include "Filling/Mesh/Mesh.hpp"
43#include "Filling/Mesh/MeshAdaptor.hpp"
44#include "Filling/Inserter/Inserter.hpp"
45#include "Filling/Inserter/SurfaceInserter.hpp"
46#include "Filling/Inserter/SurfaceRandomInserter.hpp"
47#include "Shapes/Shape.hpp"
48
49ShapeSurfaceFillerPreparator::ShapeSurfaceFillerPreparator(molecule *_filler) :
50 BaseFillerPreparator(_filler)
51{}
52
53ShapeSurfaceFillerPreparator::~ShapeSurfaceFillerPreparator()
54{}
55
56void ShapeSurfaceFillerPreparator::addShapeMesh(
57 const Shape &_shape,
58 const unsigned int _nodes)
59{
60
61 MeshAdaptor::function_t fct =
62 boost::bind(&Shape::getHomogeneousPointsOnSurface,
63 boost::cref(_shape),
64 _nodes);
65 mesh = new MeshAdaptor(fct);
66}
67
68void ShapeSurfaceFillerPreparator::addSurfaceInserter(
69 const Shape &_shape,
70 const Vector &_alignedaxis
71 )
72{
73 inserter = new Inserter(
74 Inserter::impl_ptr(new SurfaceInserter(
75 _shape,
76 _alignedaxis)
77 )
78 );
79}
80
81void ShapeSurfaceFillerPreparator::addSurfaceRandomInserter(
82 const Shape &_shape,
83 const Vector &_alignedaxis,
84 const double _MaxAtomComponent,
85 const double _MaxMoleculeComponent
86 )
87{
88 inserter = new Inserter(
89 Inserter::impl_ptr(new SurfaceRandomInserter(
90 _shape,
91 _alignedaxis,
92 _MaxAtomComponent,
93 _MaxMoleculeComponent)
94 )
95 );
96}
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