1 | /*
|
---|
2 | * Project: MoleCuilder
|
---|
3 | * Description: creates and alters molecular systems
|
---|
4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
|
---|
5 | *
|
---|
6 | *
|
---|
7 | * This file is part of MoleCuilder.
|
---|
8 | *
|
---|
9 | * MoleCuilder is free software: you can redistribute it and/or modify
|
---|
10 | * it under the terms of the GNU General Public License as published by
|
---|
11 | * the Free Software Foundation, either version 2 of the License, or
|
---|
12 | * (at your option) any later version.
|
---|
13 | *
|
---|
14 | * MoleCuilder is distributed in the hope that it will be useful,
|
---|
15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
|
---|
16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
---|
17 | * GNU General Public License for more details.
|
---|
18 | *
|
---|
19 | * You should have received a copy of the GNU General Public License
|
---|
20 | * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
|
---|
21 | */
|
---|
22 |
|
---|
23 | /*
|
---|
24 | * MoleculeOrderDescriptor.cpp
|
---|
25 | *
|
---|
26 | * Created on: Dec 7, 2010
|
---|
27 | * Author: heber
|
---|
28 | */
|
---|
29 |
|
---|
30 | // include config.h
|
---|
31 | #ifdef HAVE_CONFIG_H
|
---|
32 | #include <config.h>
|
---|
33 | #endif
|
---|
34 |
|
---|
35 | #include "CodePatterns/MemDebug.hpp"
|
---|
36 |
|
---|
37 | #include "MoleculeOrderDescriptor.hpp"
|
---|
38 | #include "MoleculeOrderDescriptor_impl.hpp"
|
---|
39 |
|
---|
40 | #include "molecule.hpp"
|
---|
41 |
|
---|
42 | using namespace std;
|
---|
43 |
|
---|
44 |
|
---|
45 | MoleculeOrderDescriptor_impl::MoleculeOrderDescriptor_impl(int _id) :
|
---|
46 | id(_id)
|
---|
47 | {}
|
---|
48 |
|
---|
49 | MoleculeOrderDescriptor_impl::~MoleculeOrderDescriptor_impl()
|
---|
50 | {}
|
---|
51 |
|
---|
52 | bool MoleculeOrderDescriptor_impl::predicate(const std::pair<moleculeId_t,const molecule*> _molecule) const
|
---|
53 | {
|
---|
54 | const molecule *mol = find();
|
---|
55 | return (mol == _molecule.second);
|
---|
56 | }
|
---|
57 |
|
---|
58 | MoleculeDescriptor MoleculeByOrder(int id){
|
---|
59 | return MoleculeDescriptor(MoleculeDescriptor::impl_ptr(new MoleculeOrderDescriptor_impl(id)));
|
---|
60 | }
|
---|
61 |
|
---|
62 | World::MoleculeSet& MoleculeOrderDescriptor_impl::getMolecules()
|
---|
63 | {
|
---|
64 | return World::getInstance().molecules;
|
---|
65 | }
|
---|
66 |
|
---|
67 | const World::MoleculeSet& MoleculeOrderDescriptor_impl::getMolecules() const
|
---|
68 | {
|
---|
69 | return World::getInstance().molecules;
|
---|
70 | }
|
---|
71 |
|
---|
72 | molecule* MoleculeOrderDescriptor_impl::find() {
|
---|
73 | World::MoleculeSet &molecules = getMolecules();
|
---|
74 |
|
---|
75 | int i=0;
|
---|
76 | molecule *mol = NULL;
|
---|
77 | if (id == 0) {
|
---|
78 | return NULL;
|
---|
79 | } else if (id > 0) {
|
---|
80 | World::MoleculeSet::internal_iterator res = molecules.begin_internal();
|
---|
81 | for (; res != molecules.end_internal(); ++res) { // when iterator is normal, ++ goes forward!
|
---|
82 | ++i;
|
---|
83 | if (id == i) {
|
---|
84 | mol = res->second;
|
---|
85 | break;
|
---|
86 | }
|
---|
87 | }
|
---|
88 | } else {
|
---|
89 | World::MoleculeSet::reverse_internal_iterator res = molecules.rbegin_internal();
|
---|
90 | for (; res != molecules.rend_internal(); ++res) { // when iterator is reverse, ++ goes backward!
|
---|
91 | --i;
|
---|
92 | if (id == i) {
|
---|
93 | mol = res->second;
|
---|
94 | break;
|
---|
95 | }
|
---|
96 | }
|
---|
97 | }
|
---|
98 |
|
---|
99 | return mol;
|
---|
100 | }
|
---|
101 |
|
---|
102 | const molecule* MoleculeOrderDescriptor_impl::find() const {
|
---|
103 | const World::MoleculeSet &molecules = getMolecules();
|
---|
104 |
|
---|
105 | int i=0;
|
---|
106 | const molecule *mol = NULL;
|
---|
107 | if (id == 0) {
|
---|
108 | return NULL;
|
---|
109 | } else if (id > 0) {
|
---|
110 | World::MoleculeSet::const_iterator res = molecules.begin();
|
---|
111 | for (; res != molecules.end(); ++res) { // when iterator is normal, ++ goes forward!
|
---|
112 | ++i;
|
---|
113 | if (id == i) {
|
---|
114 | mol = res->second;
|
---|
115 | break;
|
---|
116 | }
|
---|
117 | }
|
---|
118 | } else {
|
---|
119 | World::MoleculeSet::const_reverse_iterator res = molecules.rbegin();
|
---|
120 | for (; res != molecules.rend(); ++res) { // when iterator is reverse, ++ goes backward!
|
---|
121 | --i;
|
---|
122 | if (id == i) {
|
---|
123 | mol = res->second;
|
---|
124 | break;
|
---|
125 | }
|
---|
126 | }
|
---|
127 | }
|
---|
128 |
|
---|
129 | return mol;
|
---|
130 | }
|
---|
131 |
|
---|
132 |
|
---|
133 | vector<molecule*> MoleculeOrderDescriptor_impl::findAll(){
|
---|
134 | molecule *res = find();
|
---|
135 | return (res)?(vector<molecule*>(1,res)):(vector<molecule*>());
|
---|
136 | }
|
---|
137 |
|
---|
138 | vector<const molecule*> MoleculeOrderDescriptor_impl::findAll() const {
|
---|
139 | const molecule *res = find();
|
---|
140 | return (res)?(vector<const molecule*>(1,res)):(vector<const molecule*>());
|
---|
141 | }
|
---|