| 1 | /* | 
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| 2 | * Project: MoleCuilder | 
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| 3 | * Description: creates and alters molecular systems | 
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| 4 | * Copyright (C)  2010 University of Bonn. All rights reserved. | 
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details. | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | /* | 
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| 9 | * AtomDescriptor.cpp | 
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| 10 | * | 
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| 11 | *  Created on: Feb 5, 2010 | 
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| 12 | *      Author: crueger | 
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| 13 | */ | 
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| 14 |  | 
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| 15 | // include config.h | 
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| 16 | #ifdef HAVE_CONFIG_H | 
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| 17 | #include <config.h> | 
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| 18 | #endif | 
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| 19 |  | 
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| 20 | #include "Helpers/MemDebug.hpp" | 
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| 21 |  | 
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| 22 | #include "Descriptors/AtomDescriptor.hpp" | 
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| 23 | #include "Descriptors/AtomDescriptor_impl.hpp" | 
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| 24 |  | 
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| 25 | #include "World.hpp" | 
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| 26 | #include "atom.hpp" | 
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| 27 | #include "Patterns/ObservedContainer_impl.hpp" | 
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| 28 |  | 
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| 29 | #include <boost/bind.hpp> | 
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| 30 |  | 
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| 31 | #include <iostream> | 
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| 32 |  | 
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| 33 | using namespace std; | 
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| 34 |  | 
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| 35 | typedef World::AtomSet::internal_iterator atoms_iter_t; | 
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| 36 |  | 
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| 37 | /************************ Forwarding object **************************************/ | 
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| 38 |  | 
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| 39 |  | 
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| 40 | AtomDescriptor::AtomDescriptor(impl_ptr _impl) : | 
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| 41 | impl(_impl) | 
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| 42 | {} | 
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| 43 |  | 
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| 44 | AtomDescriptor::AtomDescriptor(const AtomDescriptor& src) : | 
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| 45 | impl(src.get_impl()) | 
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| 46 | {} | 
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| 47 |  | 
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| 48 | AtomDescriptor::~AtomDescriptor() | 
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| 49 | {} | 
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| 50 |  | 
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| 51 | AtomDescriptor& AtomDescriptor::operator=(AtomDescriptor &src){ | 
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| 52 | if(&src!=this) { | 
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| 53 | impl=src.get_impl(); | 
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| 54 | } | 
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| 55 | return *this; | 
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| 56 | } | 
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| 57 |  | 
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| 58 | atom* AtomDescriptor::find(){ | 
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| 59 | return impl->find(); | 
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| 60 | } | 
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| 61 |  | 
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| 62 | std::vector<atom*> AtomDescriptor::findAll(){ | 
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| 63 | return impl->findAll(); | 
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| 64 | } | 
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| 65 |  | 
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| 66 | AtomDescriptor::impl_ptr AtomDescriptor::get_impl() const{ | 
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| 67 | return impl; | 
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| 68 | } | 
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| 69 |  | 
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| 70 |  | 
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| 71 |  | 
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| 72 |  | 
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| 73 | /**************************** implementation ********************/ | 
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| 74 |  | 
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| 75 | AtomDescriptor_impl::AtomDescriptor_impl() | 
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| 76 | { | 
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| 77 | } | 
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| 78 |  | 
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| 79 | AtomDescriptor_impl::~AtomDescriptor_impl() | 
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| 80 | { | 
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| 81 | } | 
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| 82 |  | 
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| 83 | World::AtomSet& AtomDescriptor_impl::getAtoms(){ | 
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| 84 | return World::getInstance().atoms; | 
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| 85 | } | 
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| 86 |  | 
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| 87 | atom* AtomDescriptor_impl::find() { | 
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| 88 | World::AtomSet &atoms = getAtoms(); | 
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| 89 | atoms_iter_t res = find_if(atoms.begin_internal(),atoms.end_internal(),boost::bind(&AtomDescriptor_impl::predicate,this,_1)); | 
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| 90 | return (res!=atoms.end_internal())?((*res).second):0; | 
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| 91 | } | 
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| 92 |  | 
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| 93 | vector<atom*> AtomDescriptor_impl::findAll() { | 
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| 94 | vector<atom*> res; | 
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| 95 | World::AtomSet atoms = getAtoms(); | 
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| 96 | for_each(atoms.begin_internal(), | 
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| 97 | atoms.end_internal(), | 
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| 98 | boost::bind(&AtomDescriptor_impl::checkAndAdd, | 
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| 99 | this,&res,_1)); | 
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| 100 | return res; | 
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| 101 | } | 
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| 102 |  | 
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| 103 | void AtomDescriptor_impl::checkAndAdd(std::vector<atom*> *v,std::pair<atomId_t,atom*> p){ | 
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| 104 | if(predicate(p)){ | 
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| 105 | v->push_back(p.second); | 
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| 106 | } | 
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| 107 | } | 
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| 108 |  | 
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| 109 | /************************** Universe and Emptyset *****************/ | 
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| 110 |  | 
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| 111 | AtomAllDescriptor_impl::AtomAllDescriptor_impl() | 
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| 112 | {} | 
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| 113 |  | 
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| 114 | AtomAllDescriptor_impl::~AtomAllDescriptor_impl() | 
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| 115 | {} | 
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| 116 |  | 
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| 117 | bool AtomAllDescriptor_impl::predicate(std::pair<atomId_t,atom*>){ | 
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| 118 | return true; | 
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| 119 | } | 
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| 120 |  | 
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| 121 | AtomDescriptor AllAtoms(){ | 
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| 122 | return AtomDescriptor(AtomDescriptor::impl_ptr(new AtomAllDescriptor_impl)); | 
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| 123 | } | 
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| 124 |  | 
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| 125 | AtomNoneDescriptor_impl::AtomNoneDescriptor_impl() | 
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| 126 | {} | 
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| 127 |  | 
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| 128 | AtomNoneDescriptor_impl::~AtomNoneDescriptor_impl() | 
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| 129 | {} | 
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| 130 |  | 
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| 131 | bool AtomNoneDescriptor_impl::predicate(std::pair<atomId_t,atom*>){ | 
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| 132 | return false; | 
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| 133 | } | 
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| 134 |  | 
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| 135 | AtomDescriptor NoAtoms(){ | 
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| 136 | return AtomDescriptor(AtomDescriptor::impl_ptr(new AtomNoneDescriptor_impl)); | 
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| 137 | } | 
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| 138 |  | 
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| 139 | /************************** Operator stuff ************************/ | 
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| 140 |  | 
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| 141 | // AND | 
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| 142 | AtomAndDescriptor_impl::AtomAndDescriptor_impl(AtomDescriptor::impl_ptr _lhs, AtomDescriptor::impl_ptr _rhs) : | 
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| 143 | lhs(_lhs), rhs(_rhs) | 
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| 144 | {} | 
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| 145 |  | 
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| 146 | AtomAndDescriptor_impl::~AtomAndDescriptor_impl() | 
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| 147 | {} | 
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| 148 |  | 
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| 149 | bool AtomAndDescriptor_impl::predicate(std::pair<atomId_t,atom*> atom){ | 
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| 150 | return lhs->predicate(atom) && rhs->predicate(atom); | 
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| 151 | } | 
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| 152 | AtomDescriptor operator&&(const AtomDescriptor &lhs, const AtomDescriptor &rhs){ | 
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| 153 | AtomDescriptor::impl_ptr newImpl = AtomDescriptor::impl_ptr(new AtomAndDescriptor_impl(lhs.get_impl(),rhs.get_impl())); | 
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| 154 | return AtomDescriptor(newImpl); | 
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| 155 | } | 
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| 156 |  | 
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| 157 | // OR | 
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| 158 | AtomOrDescriptor_impl::AtomOrDescriptor_impl(AtomDescriptor::impl_ptr _lhs ,AtomDescriptor::impl_ptr _rhs) : | 
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| 159 | lhs(_lhs), rhs(_rhs) | 
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| 160 | {} | 
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| 161 |  | 
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| 162 | AtomOrDescriptor_impl::~AtomOrDescriptor_impl(){ | 
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| 163 | } | 
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| 164 |  | 
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| 165 | bool AtomOrDescriptor_impl::predicate(std::pair<atomId_t,atom*> atom){ | 
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| 166 | return lhs->predicate(atom) || rhs->predicate(atom); | 
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| 167 | } | 
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| 168 |  | 
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| 169 | AtomDescriptor  operator||(const AtomDescriptor &lhs, const AtomDescriptor &rhs){ | 
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| 170 | AtomDescriptor::impl_ptr newImpl = AtomDescriptor::impl_ptr(new AtomOrDescriptor_impl(lhs.get_impl(),rhs.get_impl())); | 
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| 171 | return AtomDescriptor(newImpl); | 
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| 172 | } | 
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| 173 |  | 
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| 174 | // NOT | 
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| 175 |  | 
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| 176 | AtomNotDescriptor_impl::AtomNotDescriptor_impl(AtomDescriptor::impl_ptr _arg) : | 
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| 177 | arg(_arg) | 
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| 178 | {} | 
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| 179 |  | 
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| 180 |  | 
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| 181 | AtomNotDescriptor_impl::~AtomNotDescriptor_impl() | 
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| 182 | { | 
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| 183 | } | 
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| 184 |  | 
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| 185 | bool AtomNotDescriptor_impl::predicate(std::pair<atomId_t,atom*> atom){ | 
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| 186 | return !(arg->predicate(atom)); | 
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| 187 | } | 
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| 188 |  | 
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| 189 | AtomDescriptor operator!(const AtomDescriptor &arg){ | 
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| 190 | AtomDescriptor::impl_ptr newImpl = AtomDescriptor::impl_ptr(new AtomNotDescriptor_impl(arg.get_impl())); | 
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| 191 | return AtomDescriptor(newImpl); | 
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| 192 | } | 
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