| [bcf653] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2010 University of Bonn. All rights reserved.
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 | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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 | 6 |  */
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 | 7 | 
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| [fc1b24] | 8 | /*
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 | 9 |  * AtomDescriptor.cpp
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 | 10 |  *
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 | 11 |  *  Created on: Feb 5, 2010
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 | 12 |  *      Author: crueger
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 | 13 |  */
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 | 14 | 
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| [bf3817] | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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| [112b09] | 21 | 
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| [7a1ce5] | 22 | #include "Descriptors/AtomDescriptor.hpp"
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 | 23 | #include "Descriptors/AtomDescriptor_impl.hpp"
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| [fc1b24] | 24 | 
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 | 25 | #include "World.hpp"
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| [7a1ce5] | 26 | #include "atom.hpp"
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| [ad011c] | 27 | #include "CodePatterns/ObservedContainer_impl.hpp"
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| [7a1ce5] | 28 | 
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| [fc1b24] | 29 | #include <boost/bind.hpp>
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| [6d574a] | 30 | 
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| [7a1ce5] | 31 | #include <iostream>
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| [fc1b24] | 32 | 
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 | 33 | using namespace std;
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 | 34 | 
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| [4d7462] | 35 | typedef World::AtomSet::internal_iterator atoms_iter_t;
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| [fc1b24] | 36 | 
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| [7a1ce5] | 37 | /************************ Forwarding object **************************************/
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 | 38 | 
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 | 39 | 
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 | 40 | AtomDescriptor::AtomDescriptor(impl_ptr _impl) :
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 | 41 |     impl(_impl)
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 | 42 | {}
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 | 43 | 
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 | 44 | AtomDescriptor::AtomDescriptor(const AtomDescriptor& src) :
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 | 45 |     impl(src.get_impl())
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 | 46 | {}
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 | 47 | 
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 | 48 | AtomDescriptor::~AtomDescriptor()
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 | 49 | {}
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 | 50 | 
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 | 51 | AtomDescriptor& AtomDescriptor::operator=(AtomDescriptor &src){
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 | 52 |   if(&src!=this) {
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 | 53 |     impl=src.get_impl();
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 | 54 |   }
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 | 55 |   return *this;
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| [fc1b24] | 56 | }
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 | 57 | 
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| [7a1ce5] | 58 | atom* AtomDescriptor::find(){
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 | 59 |   return impl->find();
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| [d1c5e2] | 60 | }
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 | 61 | 
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| [7a1ce5] | 62 | std::vector<atom*> AtomDescriptor::findAll(){
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 | 63 |   return impl->findAll();
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 | 64 | }
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 | 65 | 
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 | 66 | AtomDescriptor::impl_ptr AtomDescriptor::get_impl() const{
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 | 67 |   return impl;
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 | 68 | }
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 | 69 | 
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 | 70 | 
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 | 71 | 
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 | 72 | 
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 | 73 | /**************************** implementation ********************/
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 | 74 | 
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 | 75 | AtomDescriptor_impl::AtomDescriptor_impl()
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| [fc1b24] | 76 | {
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 | 77 | }
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 | 78 | 
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| [7a1ce5] | 79 | AtomDescriptor_impl::~AtomDescriptor_impl()
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 | 80 | {
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 | 81 | }
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| [fc1b24] | 82 | 
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| [7042f45] | 83 | World::AtomSet& AtomDescriptor_impl::getAtoms(){
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| [23b547] | 84 |   return World::getInstance().atoms;
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| [fc1b24] | 85 | }
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 | 86 | 
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| [7a1ce5] | 87 | atom* AtomDescriptor_impl::find() {
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| [4d7462] | 88 |   World::AtomSet &atoms = getAtoms();
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 | 89 |   atoms_iter_t res = find_if(atoms.begin_internal(),atoms.end_internal(),boost::bind(&AtomDescriptor_impl::predicate,this,_1));
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 | 90 |   return (res!=atoms.end_internal())?((*res).second):0;
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| [fc1b24] | 91 | }
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 | 92 | 
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| [7a1ce5] | 93 | vector<atom*> AtomDescriptor_impl::findAll() {
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| [fc1b24] | 94 |   vector<atom*> res;
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| [7042f45] | 95 |   World::AtomSet atoms = getAtoms();
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| [8cce2b] | 96 |   for_each(atoms.begin_internal(),
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 | 97 |            atoms.end_internal(),
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 | 98 |            boost::bind(&AtomDescriptor_impl::checkAndAdd,
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 | 99 |                        this,&res,_1));
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| [7a1ce5] | 100 |   return res;
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| [fc1b24] | 101 | }
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| [d1c5e2] | 102 | 
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| [8cce2b] | 103 | void AtomDescriptor_impl::checkAndAdd(std::vector<atom*> *v,std::pair<atomId_t,atom*> p){
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 | 104 |   if(predicate(p)){
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 | 105 |     v->push_back(p.second);
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 | 106 |   }
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 | 107 | }
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 | 108 | 
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| [7a1ce5] | 109 | /************************** Universe and Emptyset *****************/
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| [d1c5e2] | 110 | 
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| [7a1ce5] | 111 | AtomAllDescriptor_impl::AtomAllDescriptor_impl()
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 | 112 | {}
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| [d1c5e2] | 113 | 
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| [7a1ce5] | 114 | AtomAllDescriptor_impl::~AtomAllDescriptor_impl()
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 | 115 | {}
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| [d1c5e2] | 116 | 
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| [24a5e0] | 117 | bool AtomAllDescriptor_impl::predicate(std::pair<atomId_t,atom*>){
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| [7a1ce5] | 118 |   return true;
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| [d1c5e2] | 119 | }
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 | 120 | 
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| [7a1ce5] | 121 | AtomDescriptor AllAtoms(){
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 | 122 |   return AtomDescriptor(AtomDescriptor::impl_ptr(new AtomAllDescriptor_impl));
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| [d1c5e2] | 123 | }
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 | 124 | 
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| [7a1ce5] | 125 | AtomNoneDescriptor_impl::AtomNoneDescriptor_impl()
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 | 126 | {}
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 | 127 | 
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 | 128 | AtomNoneDescriptor_impl::~AtomNoneDescriptor_impl()
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 | 129 | {}
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 | 130 | 
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| [24a5e0] | 131 | bool AtomNoneDescriptor_impl::predicate(std::pair<atomId_t,atom*>){
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| [7a1ce5] | 132 |   return false;
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| [d1c5e2] | 133 | }
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 | 134 | 
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| [7a1ce5] | 135 | AtomDescriptor NoAtoms(){
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 | 136 |   return AtomDescriptor(AtomDescriptor::impl_ptr(new AtomNoneDescriptor_impl));
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| [d1c5e2] | 137 | }
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 | 138 | 
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| [7a1ce5] | 139 | /************************** Operator stuff ************************/
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| [d1c5e2] | 140 | 
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| [7a1ce5] | 141 | // AND
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 | 142 | AtomAndDescriptor_impl::AtomAndDescriptor_impl(AtomDescriptor::impl_ptr _lhs, AtomDescriptor::impl_ptr _rhs) :
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 | 143 |     lhs(_lhs), rhs(_rhs)
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 | 144 | {}
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| [d1c5e2] | 145 | 
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| [7a1ce5] | 146 | AtomAndDescriptor_impl::~AtomAndDescriptor_impl()
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 | 147 | {}
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| [d1c5e2] | 148 | 
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| [24a5e0] | 149 | bool AtomAndDescriptor_impl::predicate(std::pair<atomId_t,atom*> atom){
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| [7a1ce5] | 150 |   return lhs->predicate(atom) && rhs->predicate(atom);
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 | 151 | }
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 | 152 | AtomDescriptor operator&&(const AtomDescriptor &lhs, const AtomDescriptor &rhs){
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 | 153 |   AtomDescriptor::impl_ptr newImpl = AtomDescriptor::impl_ptr(new AtomAndDescriptor_impl(lhs.get_impl(),rhs.get_impl()));
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 | 154 |   return AtomDescriptor(newImpl);
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| [d1c5e2] | 155 | }
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 | 156 | 
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| [7a1ce5] | 157 | // OR
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 | 158 | AtomOrDescriptor_impl::AtomOrDescriptor_impl(AtomDescriptor::impl_ptr _lhs ,AtomDescriptor::impl_ptr _rhs) :
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 | 159 |     lhs(_lhs), rhs(_rhs)
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 | 160 | {}
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 | 161 | 
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 | 162 | AtomOrDescriptor_impl::~AtomOrDescriptor_impl(){
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| [d1c5e2] | 163 | }
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 | 164 | 
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| [24a5e0] | 165 | bool AtomOrDescriptor_impl::predicate(std::pair<atomId_t,atom*> atom){
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| [7a1ce5] | 166 |   return lhs->predicate(atom) || rhs->predicate(atom);
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| [d1c5e2] | 167 | }
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 | 168 | 
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| [7a1ce5] | 169 | AtomDescriptor  operator||(const AtomDescriptor &lhs, const AtomDescriptor &rhs){
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 | 170 |   AtomDescriptor::impl_ptr newImpl = AtomDescriptor::impl_ptr(new AtomOrDescriptor_impl(lhs.get_impl(),rhs.get_impl()));
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 | 171 |   return AtomDescriptor(newImpl);
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| [d1c5e2] | 172 | }
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 | 173 | 
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 | 174 | // NOT
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 | 175 | 
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| [7a1ce5] | 176 | AtomNotDescriptor_impl::AtomNotDescriptor_impl(AtomDescriptor::impl_ptr _arg) :
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 | 177 |     arg(_arg)
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 | 178 | {}
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| [d1c5e2] | 179 | 
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 | 180 | 
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| [7a1ce5] | 181 | AtomNotDescriptor_impl::~AtomNotDescriptor_impl()
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| [d1c5e2] | 182 | {
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 | 183 | }
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 | 184 | 
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| [24a5e0] | 185 | bool AtomNotDescriptor_impl::predicate(std::pair<atomId_t,atom*> atom){
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| [d1c5e2] | 186 |  return !(arg->predicate(atom));
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 | 187 | }
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 | 188 | 
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| [7a1ce5] | 189 | AtomDescriptor operator!(const AtomDescriptor &arg){
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 | 190 |   AtomDescriptor::impl_ptr newImpl = AtomDescriptor::impl_ptr(new AtomNotDescriptor_impl(arg.get_impl()));
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 | 191 |   return AtomDescriptor(newImpl);
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| [d1c5e2] | 192 | }
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