Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since c38826 was bcf653, checked in by Frederik Heber <heber@…>, 14 years ago |
Added copyright note to each .cpp file and an extensive one to builder.cpp.
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100644
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File size:
1.6 KB
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1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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6 | */
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7 |
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8 | /*
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9 | * AtomicInfo.cpp
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10 | *
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11 | * Created on: Aug 10, 2010
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12 | * Author: heber
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13 | */
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14 |
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15 | #include "atom.hpp"
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16 | #include "AtomicInfo.hpp"
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17 | #include "element.hpp"
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18 | #include "LinearAlgebra/Vector.hpp"
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19 |
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20 | /********************************** Functions for class AtomicInfo **********************************/
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21 |
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22 | AtomicInfo::AtomicInfo() :
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23 | Type(NULL),
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24 | Father(NULL),
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25 | Id(-1)
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26 | {}
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27 | AtomicInfo::AtomicInfo(const atom &_atom) :
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28 | Position(_atom.getPosition()),
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29 | Type(_atom.getType()),
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30 | Velocity(_atom.AtomicVelocity),
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31 | Father(_atom.father),
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32 | Mol(_atom.getMolecule()),
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33 | Id(_atom.getId())
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34 | {}
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35 |
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36 | AtomicInfo::~AtomicInfo()
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37 | {}
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38 |
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39 |
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40 | bool AtomicInfo::setAtom(atom &_atom) const
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41 | {
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42 | _atom.setPosition(Position);
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43 | _atom.setType(Type);
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44 | _atom.father = const_cast<atom *>(Father); // TODO: Actually, atom::father should be const atom *!
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45 | _atom.setMolecule(const_cast<molecule *>(Mol)); // this is ok, mol is const within AtomicInfo, but not outside (atoms need to register)
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46 | _atom.AtomicVelocity = Velocity;
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47 | if (_atom.getId() == Id)
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48 | return true;
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49 | else
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50 | return (_atom.changeId(Id));
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51 | }
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52 |
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53 | atomId_t AtomicInfo::getId() const {
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54 | return Id;
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55 | }
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56 |
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57 | AtomicInfo& AtomicInfo::operator=(const AtomicInfo& AI)
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58 | {
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59 | if (&AI == this) // check self-assignment
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60 | return *this;
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61 | Position = AI.Position;
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62 | Type = AI.Type;
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63 | Father = AI.Father;
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64 | Mol = AI.Mol;
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65 | Velocity = AI.Velocity;
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66 | Id = AI.Id;
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67 | return *this;
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68 | }
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69 |
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