Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Added_ParseSaveFragmentResults
AddingActions_SaveParseParticleParameters
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_ParticleName_to_Atom
Adding_StructOpt_integration_tests
AtomFragments
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
CombiningParticlePotentialParsing
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_BoundInBox_CenterInBox_MoleculeActions
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_PopActions
Fix_QtFragmentList_sorted_selection
Fix_Restrictedkeyset_FragmentMolecule
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
Fix_fitting_potentials
Fixes
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
FragmentAction_writes_AtomFragments
FragmentMolecule_checks_bonddegrees
GeometryObjects
Gui_Fixes
Gui_displays_atomic_force_velocity
ImplicitCharges
IndependentFragmentGrids
IndependentFragmentGrids_IndividualZeroInstances
IndependentFragmentGrids_IntegrationTest
IndependentFragmentGrids_Sole_NN_Calculation
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
MoreRobust_FragmentAutomation
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PdbParser_setsAtomName
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
Rewrite_FitPartialCharges
RotateToPrincipalAxisSystem_UndoRedo
SaturateAtoms_findBestMatching
SaturateAtoms_singleDegree
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
Switchable_LogView
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
TremoloParser_setsAtomName
Ubuntu_1604_changes
stable
Last change
on this file since c864a8 was ad011c, checked in by Frederik Heber <heber@…>, 14 years ago |
CodePatterns places all includes now in subfolder CodePatterns/.
- change all includes accordingly.
- this was necessary as Helpers and Patterns are not very distinctive names
for include folders. Already now, we had a conflict between Helpers from
CodePatterns and Helpers from this project.
- changed compilation test in ax_codepatterns.m4 when changing CodePatterns includes.
|
-
Property mode
set to
100644
|
File size:
1.7 KB
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Rev | Line | |
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[bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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| 4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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[e41c48] | 8 | /*
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| 9 | * AtomicInfo.cpp
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| 10 | *
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| 11 | * Created on: Aug 10, 2010
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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[d2b28f] | 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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[ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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[d2b28f] | 21 |
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[e41c48] | 22 | #include "atom.hpp"
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| 23 | #include "AtomicInfo.hpp"
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| 24 | #include "element.hpp"
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| 25 | #include "LinearAlgebra/Vector.hpp"
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| 26 |
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| 27 | /********************************** Functions for class AtomicInfo **********************************/
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| 28 |
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| 29 | AtomicInfo::AtomicInfo() :
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| 30 | Type(NULL),
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| 31 | Father(NULL),
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| 32 | Id(-1)
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| 33 | {}
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| 34 | AtomicInfo::AtomicInfo(const atom &_atom) :
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| 35 | Position(_atom.getPosition()),
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| 36 | Type(_atom.getType()),
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| 37 | Velocity(_atom.AtomicVelocity),
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| 38 | Father(_atom.father),
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| 39 | Mol(_atom.getMolecule()),
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| 40 | Id(_atom.getId())
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| 41 | {}
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| 42 |
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| 43 | AtomicInfo::~AtomicInfo()
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| 44 | {}
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| 45 |
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| 46 |
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| 47 | bool AtomicInfo::setAtom(atom &_atom) const
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| 48 | {
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| 49 | _atom.setPosition(Position);
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| 50 | _atom.setType(Type);
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| 51 | _atom.father = const_cast<atom *>(Father); // TODO: Actually, atom::father should be const atom *!
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| 52 | _atom.setMolecule(const_cast<molecule *>(Mol)); // this is ok, mol is const within AtomicInfo, but not outside (atoms need to register)
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| 53 | _atom.AtomicVelocity = Velocity;
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| 54 | if (_atom.getId() == Id)
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| 55 | return true;
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| 56 | else
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| 57 | return (_atom.changeId(Id));
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| 58 | }
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| 59 |
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| 60 | atomId_t AtomicInfo::getId() const {
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| 61 | return Id;
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| 62 | }
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| 63 |
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| 64 | AtomicInfo& AtomicInfo::operator=(const AtomicInfo& AI)
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| 65 | {
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| 66 | if (&AI == this) // check self-assignment
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| 67 | return *this;
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| 68 | Position = AI.Position;
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| 69 | Type = AI.Type;
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| 70 | Father = AI.Father;
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| 71 | Mol = AI.Mol;
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| 72 | Velocity = AI.Velocity;
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| 73 | Id = AI.Id;
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| 74 | return *this;
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| 75 | }
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| 76 |
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