1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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5 | *
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6 | *
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7 | * This file is part of MoleCuilder.
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8 | *
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9 | * MoleCuilder is free software: you can redistribute it and/or modify
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10 | * it under the terms of the GNU General Public License as published by
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11 | * the Free Software Foundation, either version 2 of the License, or
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12 | * (at your option) any later version.
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13 | *
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14 | * MoleCuilder is distributed in the hope that it will be useful,
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15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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17 | * GNU General Public License for more details.
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18 | *
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19 | * You should have received a copy of the GNU General Public License
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20 | * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
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21 | */
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22 |
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23 | /*
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24 | * atom_bondedparticleinfo.cpp
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25 | *
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26 | * Created on: Oct 19, 2009
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27 | * Author: heber
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28 | */
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29 |
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30 | // include config.h
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31 | #ifdef HAVE_CONFIG_H
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32 | #include <config.h>
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33 | #endif
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34 |
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35 | #include "CodePatterns/MemDebug.hpp"
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36 |
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37 | #include "CodePatterns/Assert.hpp"
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38 | #include "CodePatterns/Log.hpp"
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39 |
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40 | #include "WorldTime.hpp"
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41 |
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42 | #include "atom_bondedparticleinfo.hpp"
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43 |
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44 |
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45 | BondList BondedParticleInfo::emptyList;
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46 |
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47 | void BondedParticleInfo::AppendTrajectoryStep(const unsigned int _step)
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48 | {
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49 | ListOfBonds.insert( std::make_pair(_step, emptyList) );
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50 | LOG(5,"BondedParticleInfo::AppendTrajectoryStep() called, size is " << ListOfBonds.size());
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51 | }
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52 |
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53 | void BondedParticleInfo::removeTrajectoryStep(const unsigned int _step)
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54 | {
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55 | ListOfBonds.erase(_step);
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56 | LOG(5,"BondedParticleInfo::removeTrajectoryStep() called, size is " << ListOfBonds.size());
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57 | }
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58 |
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59 | const BondList& BondedParticleInfo::getListOfBonds() const
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60 | {
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61 | return getListOfBondsAtStep(WorldTime::getTime());
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62 | }
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63 |
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64 | template <class List_t>
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65 | void setEntryInList(
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66 | List_t &_list,
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67 | const typename List_t::key_type _step,
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68 | const typename List_t::mapped_type &_value)
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69 | {
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70 | typename List_t::iterator iter =
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71 | _list.find(_step);
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72 | if (iter != _list.end())
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73 | iter->second = _value;
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74 | else
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75 | _list.insert( std::make_pair(_step, _value) );
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76 | }
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77 |
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78 | template <class List_t>
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79 | const typename List_t::mapped_type& getEntryInList(
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80 | const List_t &_list,
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81 | const typename List_t::key_type _step,
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82 | const typename List_t::mapped_type &_empty)
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83 | {
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84 | typename List_t::const_iterator iter =
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85 | _list.find(_step);
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86 | if (iter != _list.end())
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87 | return iter->second;
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88 | return _empty;
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89 | }
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90 |
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91 | const BondList& BondedParticleInfo::getListOfBondsAtStep(unsigned int _step) const
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92 | {
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93 | return getEntryInList<BondTrajectory_t>(ListOfBonds, _step, emptyList);
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94 | }
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95 |
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96 | const unsigned char& BondedParticleInfo::getMaxOrder() const
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97 | {
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98 | return getMaxOrder(WorldTime::getTime());
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99 | }
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100 |
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101 | const unsigned char& BondedParticleInfo::getMaxOrder(unsigned int _step) const
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102 | {
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103 | static unsigned char emptyOrder=0;
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104 | return getEntryInList<OrderTrajectory_t>(MaxOrder, _step, emptyOrder);
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105 | }
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106 |
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107 | void BondedParticleInfo::setMaxOrder(unsigned char _value)
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108 | {
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109 | setMaxOrder(WorldTime::getTime(), _value);
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110 | }
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111 |
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112 | void BondedParticleInfo::setMaxOrder(unsigned int _step, const unsigned char _value)
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113 | {
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114 | setEntryInList<OrderTrajectory_t>(MaxOrder, _step, _value);
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115 | }
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116 |
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117 | const unsigned char& BondedParticleInfo::getAdaptiveOrder() const
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118 | {
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119 | return getAdaptiveOrder(WorldTime::getTime());
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120 | }
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121 |
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122 | const unsigned char& BondedParticleInfo::getAdaptiveOrder(unsigned int _step) const
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123 | {
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124 | static unsigned char emptyOrder=0;
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125 | return getEntryInList<OrderTrajectory_t>(AdaptiveOrder, _step, emptyOrder);
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126 | }
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127 |
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128 | void BondedParticleInfo::setAdaptiveOrder(unsigned char _value)
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129 | {
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130 | setAdaptiveOrder(WorldTime::getTime(), _value);
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131 | }
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132 |
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133 | void BondedParticleInfo::setAdaptiveOrder(unsigned int _step, const unsigned char _value)
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134 | {
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135 | setEntryInList<OrderTrajectory_t>(AdaptiveOrder, _step, _value);
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136 | }
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137 |
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