source: src/Atom/atom_bondedparticleinfo.cpp@ 4464ef

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Last change on this file since 4464ef was a1c8fa, checked in by Frederik Heber <heber@…>, 8 years ago

FIX: BondedParticleInfo::MaxOrder and ::AdapativeOrder are now stored per trajectory step.

  • adapted uses in AdaptivityMap and Fragmentation as members are now protected.
  • Property mode set to 100644
File size: 3.7 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * atom_bondedparticleinfo.cpp
25 *
26 * Created on: Oct 19, 2009
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35#include "CodePatterns/MemDebug.hpp"
36
37#include "CodePatterns/Assert.hpp"
38#include "CodePatterns/Log.hpp"
39
40#include "WorldTime.hpp"
41
42#include "atom_bondedparticleinfo.hpp"
43
44
45BondList BondedParticleInfo::emptyList;
46
47void BondedParticleInfo::AppendTrajectoryStep(const unsigned int _step)
48{
49 ListOfBonds.insert( std::make_pair(_step, emptyList) );
50 LOG(5,"BondedParticleInfo::AppendTrajectoryStep() called, size is " << ListOfBonds.size());
51}
52
53void BondedParticleInfo::removeTrajectoryStep(const unsigned int _step)
54{
55 ListOfBonds.erase(_step);
56 LOG(5,"BondedParticleInfo::removeTrajectoryStep() called, size is " << ListOfBonds.size());
57}
58
59const BondList& BondedParticleInfo::getListOfBonds() const
60{
61 return getListOfBondsAtStep(WorldTime::getTime());
62}
63
64template <class List_t>
65void setEntryInList(
66 List_t &_list,
67 const typename List_t::key_type _step,
68 const typename List_t::mapped_type &_value)
69{
70 typename List_t::iterator iter =
71 _list.find(_step);
72 if (iter != _list.end())
73 iter->second = _value;
74 else
75 _list.insert( std::make_pair(_step, _value) );
76}
77
78template <class List_t>
79const typename List_t::mapped_type& getEntryInList(
80 const List_t &_list,
81 const typename List_t::key_type _step,
82 const typename List_t::mapped_type &_empty)
83{
84 typename List_t::const_iterator iter =
85 _list.find(_step);
86 if (iter != _list.end())
87 return iter->second;
88 return _empty;
89}
90
91const BondList& BondedParticleInfo::getListOfBondsAtStep(unsigned int _step) const
92{
93 return getEntryInList<BondTrajectory_t>(ListOfBonds, _step, emptyList);
94}
95
96const unsigned char& BondedParticleInfo::getMaxOrder() const
97{
98 return getMaxOrder(WorldTime::getTime());
99}
100
101const unsigned char& BondedParticleInfo::getMaxOrder(unsigned int _step) const
102{
103 static unsigned char emptyOrder=0;
104 return getEntryInList<OrderTrajectory_t>(MaxOrder, _step, emptyOrder);
105}
106
107void BondedParticleInfo::setMaxOrder(unsigned char _value)
108{
109 setMaxOrder(WorldTime::getTime(), _value);
110}
111
112void BondedParticleInfo::setMaxOrder(unsigned int _step, const unsigned char _value)
113{
114 setEntryInList<OrderTrajectory_t>(MaxOrder, _step, _value);
115}
116
117const unsigned char& BondedParticleInfo::getAdaptiveOrder() const
118{
119 return getAdaptiveOrder(WorldTime::getTime());
120}
121
122const unsigned char& BondedParticleInfo::getAdaptiveOrder(unsigned int _step) const
123{
124 static unsigned char emptyOrder=0;
125 return getEntryInList<OrderTrajectory_t>(AdaptiveOrder, _step, emptyOrder);
126}
127
128void BondedParticleInfo::setAdaptiveOrder(unsigned char _value)
129{
130 setAdaptiveOrder(WorldTime::getTime(), _value);
131}
132
133void BondedParticleInfo::setAdaptiveOrder(unsigned int _step, const unsigned char _value)
134{
135 setEntryInList<OrderTrajectory_t>(AdaptiveOrder, _step, _value);
136}
137
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