| [bcf653] | 1 | /* | 
|---|
|  | 2 | * Project: MoleCuilder | 
|---|
|  | 3 | * Description: creates and alters molecular systems | 
|---|
| [0aa122] | 4 | * Copyright (C)  2010-2012 University of Bonn. All rights reserved. | 
|---|
| [94d5ac6] | 5 | * | 
|---|
|  | 6 | * | 
|---|
|  | 7 | *   This file is part of MoleCuilder. | 
|---|
|  | 8 | * | 
|---|
|  | 9 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
|---|
|  | 10 | *    it under the terms of the GNU General Public License as published by | 
|---|
|  | 11 | *    the Free Software Foundation, either version 2 of the License, or | 
|---|
|  | 12 | *    (at your option) any later version. | 
|---|
|  | 13 | * | 
|---|
|  | 14 | *    MoleCuilder is distributed in the hope that it will be useful, | 
|---|
|  | 15 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
|---|
|  | 16 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
|---|
|  | 17 | *    GNU General Public License for more details. | 
|---|
|  | 18 | * | 
|---|
|  | 19 | *    You should have received a copy of the GNU General Public License | 
|---|
|  | 20 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
|---|
| [bcf653] | 21 | */ | 
|---|
|  | 22 |  | 
|---|
| [6b919f8] | 23 | /* | 
|---|
|  | 24 | * atom_bondedparticleinfo.cpp | 
|---|
|  | 25 | * | 
|---|
|  | 26 | *  Created on: Oct 19, 2009 | 
|---|
|  | 27 | *      Author: heber | 
|---|
|  | 28 | */ | 
|---|
|  | 29 |  | 
|---|
| [bf3817] | 30 | // include config.h | 
|---|
|  | 31 | #ifdef HAVE_CONFIG_H | 
|---|
|  | 32 | #include <config.h> | 
|---|
|  | 33 | #endif | 
|---|
|  | 34 |  | 
|---|
| [ad011c] | 35 | #include "CodePatterns/MemDebug.hpp" | 
|---|
| [112b09] | 36 |  | 
|---|
| [9d83b6] | 37 | #include "CodePatterns/Assert.hpp" | 
|---|
| [38c44b] | 38 | #include "CodePatterns/Log.hpp" | 
|---|
| [9d83b6] | 39 |  | 
|---|
|  | 40 | #include "WorldTime.hpp" | 
|---|
|  | 41 |  | 
|---|
| [6b919f8] | 42 | #include "atom_bondedparticleinfo.hpp" | 
|---|
|  | 43 |  | 
|---|
| [5e2f80] | 44 |  | 
|---|
|  | 45 | BondList BondedParticleInfo::emptyList; | 
|---|
|  | 46 |  | 
|---|
| [6b919f8] | 47 | /** Constructor of class BondedParticleInfo. | 
|---|
|  | 48 | */ | 
|---|
| [97b825] | 49 | BondedParticleInfo::BondedParticleInfo() : | 
|---|
|  | 50 | AdaptiveOrder(0), | 
|---|
| [d760bb] | 51 | MaxOrder(0) | 
|---|
| [9d83b6] | 52 | {} | 
|---|
| [6b919f8] | 53 |  | 
|---|
|  | 54 | /** Destructor of class BondedParticleInfo. | 
|---|
|  | 55 | */ | 
|---|
|  | 56 | BondedParticleInfo::~BondedParticleInfo() | 
|---|
| [9d83b6] | 57 | {} | 
|---|
|  | 58 |  | 
|---|
| [8cc22f] | 59 | void BondedParticleInfo::AppendTrajectoryStep(const unsigned int _step) | 
|---|
| [1e6249] | 60 | { | 
|---|
| [8cc22f] | 61 | ListOfBonds.insert( std::make_pair(_step, emptyList) ); | 
|---|
| [38c44b] | 62 | LOG(5,"BondedParticleInfo::AppendTrajectoryStep() called, size is " << ListOfBonds.size()); | 
|---|
| [1e6249] | 63 | } | 
|---|
|  | 64 |  | 
|---|
| [8cc22f] | 65 | void BondedParticleInfo::removeTrajectoryStep(const unsigned int _step) | 
|---|
| [7e51e1] | 66 | { | 
|---|
| [8cc22f] | 67 | ListOfBonds.erase(_step); | 
|---|
| [7e51e1] | 68 | LOG(5,"BondedParticleInfo::removeTrajectoryStep() called, size is " << ListOfBonds.size()); | 
|---|
|  | 69 | } | 
|---|
|  | 70 |  | 
|---|
| [9d83b6] | 71 | const BondList& BondedParticleInfo::getListOfBonds() const | 
|---|
|  | 72 | { | 
|---|
| [8cc22f] | 73 | return getListOfBondsAtStep(WorldTime::getTime()); | 
|---|
| [9d83b6] | 74 | } | 
|---|
|  | 75 |  | 
|---|
|  | 76 | const BondList& BondedParticleInfo::getListOfBondsAtStep(unsigned int _step) const | 
|---|
| [6b919f8] | 77 | { | 
|---|
| [8cc22f] | 78 | BondTrajectory_t::const_iterator iter = | 
|---|
|  | 79 | ListOfBonds.find(_step); | 
|---|
|  | 80 | if (iter != ListOfBonds.end()) | 
|---|
|  | 81 | return iter->second; | 
|---|
|  | 82 | return emptyList; | 
|---|
| [9d83b6] | 83 | } | 
|---|