Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | Last change
 on this file since ce7bfd was             560bbe, checked in by Frederik Heber <heber@…>, 14 years ago | 
        
          | 
AtomicInfo now also (re)stores ParticleInfo::Nr, molecule has own IdPool.
 molecule now also has an internal IdPool to be able to hand out unique ids,
according to uniqueId policy.
new functions: molecule::changeAtomNr(), molecule::setAtomName()
molecule::erase() and ::insert() release and set the id (and the name).
molecule::setAtomName() uses getNr() with id increased by one.
AtomicInfo stores and sets ParticleInfo::Nr.
atom::changeNr() is similar to changeId() only for the molecule.
molecule::AddAtom() does not set the name anymore, is done by ::insert().
simplified molecule::doCountAtoms() a lot, no more naming of atoms.
SPEEDUP: This speeds up the GUI already a lot.
TESTFIX: changed regression test Tesselation/BigNonConvex due to different
ordering of node ids (due to above), surface is still the same (checked).
 | 
        
          | 
              
Property                 mode
 set to                 100644 | 
        
          | File size:
            776 bytes | 
      
      
| Rev | Line |  | 
|---|
| [e41c48] | 1 | /* | 
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|  | 2 | * AtomicInfo.hpp | 
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|  | 3 | * | 
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|  | 4 | *  Created on: Aug 10, 2010 | 
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|  | 5 | *      Author: heber | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | #ifndef ATOMICINFO_HPP_ | 
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|  | 9 | #define ATOMICINFO_HPP_ | 
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|  | 10 |  | 
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| [56f73b] | 11 | // include config.h | 
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|  | 12 | #ifdef HAVE_CONFIG_H | 
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|  | 13 | #include <config.h> | 
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|  | 14 | #endif | 
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|  | 15 |  | 
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|  | 16 |  | 
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| [e41c48] | 17 | class atom; | 
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|  | 18 | class element; | 
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|  | 19 | class molecule; | 
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|  | 20 | class Vector; | 
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|  | 21 |  | 
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|  | 22 | /** This is for storing and transfering the information contained within an atom. | 
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|  | 23 | * This is needed for Undo/Redo operations of AtomActions. | 
|---|
|  | 24 | */ | 
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|  | 25 | class AtomicInfo { | 
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|  | 26 | public: | 
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|  | 27 | AtomicInfo(); | 
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|  | 28 | AtomicInfo(const atom &_atom); | 
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|  | 29 | ~AtomicInfo(); | 
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|  | 30 |  | 
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|  | 31 | bool setAtom(atom &_atom) const; | 
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|  | 32 | atomId_t getId() const; | 
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|  | 33 |  | 
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|  | 34 | AtomicInfo& operator=(const AtomicInfo&); | 
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|  | 35 |  | 
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|  | 36 | private: | 
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|  | 37 | Vector Position; | 
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|  | 38 | const element * Type; | 
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|  | 39 | Vector Velocity; | 
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| [3867a7] | 40 | atomId_t FatherId; | 
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|  | 41 | moleculeId_t MolId; | 
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| [e41c48] | 42 | atomId_t Id; | 
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| [560bbe] | 43 | int Nr; | 
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| [e41c48] | 44 | }; | 
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|  | 45 |  | 
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|  | 46 |  | 
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|  | 47 | #endif /* ATOMICINFO_HPP_ */ | 
|---|
       
      
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