source: src/Actions/WorldAction/ScaleBoxAction.cpp@ 3c9ac3

Action_Thermostats Adding_MD_integration_tests Adding_StructOpt_integration_tests AutomationFragmentation_failures Candidate_v1.6.1 ChemicalSpaceEvaluator Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Exclude_Hydrogens_annealWithBondGraph Fix_Verbose_Codepatterns ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion Gui_displays_atomic_force_velocity JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool PythonUI_with_named_parameters Recreated_GuiChecks StoppableMakroAction TremoloParser_IncreasedPrecision
Last change on this file since 3c9ac3 was 9eb71b3, checked in by Frederik Heber <frederik.heber@…>, 8 years ago

Commented out MemDebug include and Memory::ignore.

  • MemDebug clashes with various allocation operators that use a specific placement in memory. It is so far not possible to wrap new/delete fully. Hence, we stop this effort which so far has forced us to put ever more includes (with clashes) into MemDebug and thereby bloat compilation time.
  • MemDebug does not add that much usefulness which is not also provided by valgrind.
  • Property mode set to 100644
File size: 4.2 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * ScaleBoxAction.cpp
25 *
26 * Created on: May 8, 2010
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35//#include "CodePatterns/MemDebug.hpp"
36
37#include "Atom/atom.hpp"
38#include "CodePatterns/Log.hpp"
39#include "LinearAlgebra/RealSpaceMatrix.hpp"
40#include "LinearAlgebra/Vector.hpp"
41#include "World.hpp"
42#include "Box.hpp"
43
44#include <iostream>
45#include <string>
46#include <vector>
47
48#include "Actions/WorldAction/ScaleBoxAction.hpp"
49
50using namespace MoleCuilder;
51
52// and construct the stuff
53#include "ScaleBoxAction.def"
54#include "Action_impl_pre.hpp"
55/** =========== define the function ====================== */
56ActionState::ptr WorldScaleBoxAction::performCall() {
57 double x[NDIM];
58
59 // scale atoms
60 for (int i=0;i<NDIM;i++)
61 x[i] = params.Scaler.get()[i];
62 std::vector<atom*> AllAtoms = World::getInstance().getAllAtoms();
63 for(std::vector<atom*>::iterator AtomRunner = AllAtoms.begin(); AtomRunner != AllAtoms.end(); ++AtomRunner) {
64 (*AtomRunner)->ScaleAll(x);
65 }
66
67 // scale box
68 RealSpaceMatrix M = World::getInstance().getDomain().getM();
69 RealSpaceMatrix scale;
70 for (int i=0;i<NDIM;i++) {
71 scale.at(i,i) = params.Scaler.get()[i];
72 }
73 M *= scale;
74 World::getInstance().setDomain(M);
75
76 // give final box size
77 LOG(0, "Box domain is now " << World::getInstance().getDomain().getM());
78
79 // create undo state
80 WorldScaleBoxState *UndoState = new WorldScaleBoxState(params);
81
82 return ActionState::ptr(UndoState);
83}
84
85ActionState::ptr WorldScaleBoxAction::performUndo(ActionState::ptr _state) {
86 WorldScaleBoxState *state = assert_cast<WorldScaleBoxState*>(_state.get());
87
88 // scale back atoms
89 double x[NDIM];
90 for (int i=0;i<NDIM;i++)
91 x[i] = 1./state->params.Scaler.get()[i];
92 vector<atom*> AllAtoms = World::getInstance().getAllAtoms();
93 for(vector<atom*>::iterator AtomRunner = AllAtoms.begin(); AtomRunner != AllAtoms.end(); ++AtomRunner) {
94 (*AtomRunner)->ScaleAll(x);
95 }
96
97 // scale back box
98 RealSpaceMatrix M = World::getInstance().getDomain().getM();
99 RealSpaceMatrix scale;
100 for (int i=0;i<NDIM;i++) {
101 scale.at(i,i) = 1./state->params.Scaler.get()[i];
102 }
103 M *= scale;
104 World::getInstance().setDomain(M);
105
106 // give final box size
107 LOG(0, "Box domain restored to " << World::getInstance().getDomain().getM());
108
109 return ActionState::ptr(_state);
110}
111
112ActionState::ptr WorldScaleBoxAction::performRedo(ActionState::ptr _state){
113 WorldScaleBoxState *state = assert_cast<WorldScaleBoxState*>(_state.get());
114
115 // scale atoms
116 double x[NDIM];
117 for (int i=0;i<NDIM;i++)
118 x[i] = state->params.Scaler.get()[i];
119 vector<atom*> AllAtoms = World::getInstance().getAllAtoms();
120 for(vector<atom*>::iterator AtomRunner = AllAtoms.begin(); AtomRunner != AllAtoms.end(); ++AtomRunner) {
121 (*AtomRunner)->ScaleAll(x);
122 }
123
124 // scale box
125 RealSpaceMatrix M = World::getInstance().getDomain().getM();
126 RealSpaceMatrix scale;
127 for (int i=0;i<NDIM;i++) {
128 scale.at(i,i) = state->params.Scaler.get()[i];
129 }
130 M *= scale;
131 World::getInstance().setDomain(M);
132
133 // give final box size
134 LOG(0, "Box domain is again " << World::getInstance().getDomain().getM());
135
136 return ActionState::ptr(_state);
137}
138
139bool WorldScaleBoxAction::canUndo() {
140 return true;
141}
142
143bool WorldScaleBoxAction::shouldUndo() {
144 return true;
145}
146/** =========== end of function ====================== */
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