1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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6 | */
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7 |
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8 | /*
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9 | * CenterInBoxAction.cpp
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10 | *
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11 | * Created on: May 8, 2010
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12 | * Author: heber
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13 | */
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14 |
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15 | // include config.h
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16 | #ifdef HAVE_CONFIG_H
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17 | #include <config.h>
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18 | #endif
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19 |
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20 | // include headers that implement a archive in simple text format
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21 | #include <boost/archive/text_oarchive.hpp>
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22 | #include <boost/archive/text_iarchive.hpp>
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23 | #include "boost/serialization/vector.hpp"
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24 |
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25 | #include "CodePatterns/MemDebug.hpp"
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26 |
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27 | #include <boost/shared_ptr.hpp>
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28 |
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29 | #include "Box.hpp"
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30 | #include "CodePatterns/Log.hpp"
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31 | #include "LinearAlgebra/MatrixContent.hpp"
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32 | #include "LinearAlgebra/RealSpaceMatrix.hpp"
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33 | #include "molecule.hpp"
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34 | #include "World.hpp"
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35 |
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36 | #include <iostream>
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37 | #include <string>
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38 | #include <vector>
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39 |
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40 | #include "Actions/WorldAction/CenterInBoxAction.hpp"
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41 |
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42 | using namespace MoleCuilder;
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43 |
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44 | // and construct the stuff
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45 | #include "CenterInBoxAction.def"
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46 | #include "Action_impl_pre.hpp"
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47 | /** =========== define the function ====================== */
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48 | Action::state_ptr WorldCenterInBoxAction::performCall() {
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49 | // create undo state
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50 | std::stringstream undostream;
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51 | boost::archive::text_oarchive oa(undostream);
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52 | const RealSpaceMatrix &matrix = World::getInstance().getDomain().getM();
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53 | oa << matrix;
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54 | std::vector< boost::shared_ptr<Vector> > OldPositions;
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55 | std::vector<molecule*> AllMolecules = World::getInstance().getAllMolecules();
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56 | for (std::vector<molecule*>::iterator MolRunner = AllMolecules.begin();
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57 | MolRunner != AllMolecules.end();
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58 | ++MolRunner) {
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59 | for(molecule::const_iterator AtomRunner = (*MolRunner)->begin();
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60 | AtomRunner != (*MolRunner)->end();
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61 | ++AtomRunner) {
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62 | OldPositions.push_back(
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63 | boost::shared_ptr<Vector>(new Vector(
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64 | (*AtomRunner)->getPosition()
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65 | ))
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66 | );
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67 | }
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68 | }
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69 |
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70 | // set new domain
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71 | World::getInstance().setDomain(params.cell_size.get());
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72 |
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73 | // center atoms
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74 | for (std::vector<molecule*>::iterator MolRunner = AllMolecules.begin(); MolRunner != AllMolecules.end(); ++MolRunner) {
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75 | (*MolRunner)->CenterInBox();
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76 | }
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77 |
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78 | // give final box size
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79 | LOG(0, "Box domain is now " << World::getInstance().getDomain().getM());
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80 |
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81 | // create undo state
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82 | WorldCenterInBoxState *UndoState =
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83 | new WorldCenterInBoxState(
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84 | undostream.str(),
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85 | OldPositions,
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86 | params
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87 | );
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88 |
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89 | return Action::state_ptr(UndoState);
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90 | }
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91 |
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92 | Action::state_ptr WorldCenterInBoxAction::performUndo(Action::state_ptr _state) {
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93 | WorldCenterInBoxState *state = assert_cast<WorldCenterInBoxState*>(_state.get());
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94 |
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95 | // restore domain
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96 | RealSpaceMatrix matrix;
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97 | std::stringstream undostream(state->undostring);
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98 | boost::archive::text_iarchive ia(undostream);
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99 | ia >> matrix;
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100 | World::getInstance().setDomain(matrix);
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101 |
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102 | // place atoms on old positions
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103 | std::vector< boost::shared_ptr<Vector> >::const_iterator OldPositionsIter = state->OldPositions.begin();
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104 | std::vector<molecule*> AllMolecules = World::getInstance().getAllMolecules();
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105 | for (std::vector<molecule*>::iterator MolRunner = AllMolecules.begin();
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106 | MolRunner != AllMolecules.end();
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107 | ++MolRunner) {
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108 | for(molecule::iterator AtomRunner = (*MolRunner)->begin();
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109 | AtomRunner != (*MolRunner)->end();
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110 | ++AtomRunner) {
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111 | ASSERT(OldPositionsIter != state->OldPositions.end(),
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112 | "WorldBoundInBoxAction::performUndo() - too few positions stored in UndoState.");
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113 | (*AtomRunner)->setPosition(**(OldPositionsIter++));
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114 | }
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115 | }
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116 |
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117 | // give final box size
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118 | LOG(0, "Box domain restored to " << World::getInstance().getDomain().getM());
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119 |
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120 | return Action::state_ptr(_state);
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121 | }
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122 |
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123 | Action::state_ptr WorldCenterInBoxAction::performRedo(Action::state_ptr _state){
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124 | WorldCenterInBoxState *state = assert_cast<WorldCenterInBoxState*>(_state.get());
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125 |
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126 | // set new domain
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127 | World::getInstance().setDomain(state->params.cell_size.get());
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128 |
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129 | // center atoms
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130 | std::vector<molecule *> AllMolecules = World::getInstance().getAllMolecules();
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131 | for (std::vector<molecule*>::iterator MolRunner = AllMolecules.begin(); MolRunner != AllMolecules.end(); ++MolRunner) {
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132 | (*MolRunner)->CenterInBox();
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133 | }
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134 |
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135 | // give final box size
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136 | LOG(0, "Box domain is again " << World::getInstance().getDomain().getM());
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137 |
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138 | return Action::state_ptr(_state);
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139 | }
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140 |
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141 | bool WorldCenterInBoxAction::canUndo() {
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142 | return true;
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143 | }
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144 |
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145 | bool WorldCenterInBoxAction::shouldUndo() {
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146 | return true;
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147 | }
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148 | /** =========== end of function ====================== */
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