| 1 | /* | 
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| 2 | * Project: MoleCuilder | 
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| 3 | * Description: creates and alters molecular systems | 
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| 4 | * Copyright (C)  2010-2012 University of Bonn. All rights reserved. | 
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details. | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | /* | 
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| 9 | * ConvexEnvelopeAction.cpp | 
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| 10 | * | 
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| 11 | *  Created on: May 12, 2010 | 
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| 12 | *      Author: heber | 
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| 13 | */ | 
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| 14 |  | 
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| 15 | // include config.h | 
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| 16 | #ifdef HAVE_CONFIG_H | 
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| 17 | #include <config.h> | 
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| 18 | #endif | 
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| 19 |  | 
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| 20 | #include "CodePatterns/MemDebug.hpp" | 
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| 21 |  | 
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| 22 | #include "CodePatterns/Log.hpp" | 
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| 23 | #include "config.hpp" | 
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| 24 | #include "LinkedCell/linkedcell.hpp" | 
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| 25 | #include "LinkedCell/PointCloudAdaptor.hpp" | 
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| 26 | #include "molecule.hpp" | 
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| 27 | #include "Tesselation/boundary.hpp" | 
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| 28 | #include "Tesselation/tesselation.hpp" | 
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| 29 | #include "World.hpp" | 
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| 30 |  | 
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| 31 | #include <iostream> | 
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| 32 | #include <string> | 
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| 33 |  | 
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| 34 | #include "Actions/TesselationAction/ConvexEnvelopeAction.hpp" | 
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| 35 |  | 
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| 36 | using namespace MoleCuilder; | 
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| 37 |  | 
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| 38 | // and construct the stuff | 
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| 39 | #include "ConvexEnvelopeAction.def" | 
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| 40 | #include "Action_impl_pre.hpp" | 
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| 41 | /** =========== define the function ====================== */ | 
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| 42 | Action::state_ptr TesselationConvexEnvelopeAction::performCall() { | 
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| 43 | molecule * mol = NULL; | 
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| 44 | bool Success = true; | 
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| 45 | config *configuration = World::getInstance().getConfig(); | 
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| 46 |  | 
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| 47 | // obtain information | 
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| 48 | getParametersfromValueStorage(); | 
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| 49 |  | 
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| 50 | for (World::MoleculeSelectionIterator iter = World::getInstance().beginMoleculeSelection(); iter != World::getInstance().endMoleculeSelection(); ++iter) { | 
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| 51 | mol = iter->second; | 
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| 52 | class Tesselation *TesselStruct = NULL; | 
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| 53 | const LinkedCell_deprecated *LCList = NULL; | 
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| 54 | LOG(0, "Evaluating volume of the convex envelope."); | 
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| 55 | LOG(1, "Storing tecplot convex data in " << params.filenameConvex << "."); | 
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| 56 | LOG(1, "Storing tecplot non-convex data in " << params.filenameNonConvex << "."); | 
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| 57 | PointCloudAdaptor<molecule> cloud(mol, mol->name); | 
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| 58 | LCList = new LinkedCell_deprecated(cloud, 100.); | 
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| 59 | //Boundaries *BoundaryPoints = NULL; | 
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| 60 | //FindConvexBorder(mol, BoundaryPoints, TesselStruct, LCList, argv[argptr]); | 
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| 61 | // TODO: Beide Funktionen sollten streams anstelle des Filenamen benutzen, besser fuer unit tests | 
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| 62 | FindNonConvexBorder(mol, TesselStruct, LCList, 50., params.filenameNonConvex.string().c_str()); | 
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| 63 | //RemoveAllBoundaryPoints(TesselStruct, mol, argv[argptr]); | 
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| 64 | const double volumedifference = ConvexizeNonconvexEnvelope(TesselStruct, mol, params.filenameConvex.string().c_str()); | 
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| 65 | const double clustervolume = VolumeOfConvexEnvelope(TesselStruct, configuration); | 
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| 66 | LOG(0, "The tesselated volume area is " << clustervolume << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3."); | 
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| 67 | LOG(0, "The non-convex tesselated volume area is " << clustervolume-volumedifference << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3."); | 
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| 68 | delete(TesselStruct); | 
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| 69 | delete(LCList); | 
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| 70 | } | 
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| 71 | if (Success) | 
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| 72 | return Action::success; | 
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| 73 | else | 
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| 74 | return Action::failure; | 
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| 75 | } | 
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| 76 |  | 
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| 77 | Action::state_ptr TesselationConvexEnvelopeAction::performUndo(Action::state_ptr _state) { | 
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| 78 | //  TesselationConvexEnvelopeState *state = assert_cast<TesselationConvexEnvelopeState*>(_state.get()); | 
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| 79 |  | 
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| 80 | //  string newName = state->mol->getName(); | 
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| 81 | //  state->mol->setName(state->lastName); | 
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| 82 |  | 
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| 83 | return Action::failure; | 
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| 84 | } | 
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| 85 |  | 
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| 86 | Action::state_ptr TesselationConvexEnvelopeAction::performRedo(Action::state_ptr _state){ | 
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| 87 | // Undo and redo have to do the same for this action | 
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| 88 | return performUndo(_state); | 
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| 89 | } | 
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| 90 |  | 
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| 91 | bool TesselationConvexEnvelopeAction::canUndo() { | 
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| 92 | return false; | 
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| 93 | } | 
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| 94 |  | 
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| 95 | bool TesselationConvexEnvelopeAction::shouldUndo() { | 
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| 96 | return false; | 
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| 97 | } | 
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| 98 | /** =========== end of function ====================== */ | 
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