| [bcf653] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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| [0aa122] | 4 | * Copyright (C)  2010-2012 University of Bonn. All rights reserved. | 
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| [94d5ac6] | 5 | * | 
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|  | 6 | * | 
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|  | 7 | *   This file is part of MoleCuilder. | 
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|  | 8 | * | 
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|  | 9 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
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|  | 10 | *    it under the terms of the GNU General Public License as published by | 
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|  | 11 | *    the Free Software Foundation, either version 2 of the License, or | 
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|  | 12 | *    (at your option) any later version. | 
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|  | 13 | * | 
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|  | 14 | *    MoleCuilder is distributed in the hope that it will be useful, | 
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|  | 15 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
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|  | 16 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
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|  | 17 | *    GNU General Public License for more details. | 
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|  | 18 | * | 
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|  | 19 | *    You should have received a copy of the GNU General Public License | 
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|  | 20 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
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| [bcf653] | 21 | */ | 
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|  | 22 |  | 
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| [97ebf8] | 23 | /* | 
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|  | 24 | * ConvexEnvelopeAction.cpp | 
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|  | 25 | * | 
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|  | 26 | *  Created on: May 12, 2010 | 
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|  | 27 | *      Author: heber | 
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|  | 28 | */ | 
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|  | 29 |  | 
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| [bf3817] | 30 | // include config.h | 
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|  | 31 | #ifdef HAVE_CONFIG_H | 
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|  | 32 | #include <config.h> | 
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|  | 33 | #endif | 
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|  | 34 |  | 
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| [ad011c] | 35 | #include "CodePatterns/MemDebug.hpp" | 
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| [112b09] | 36 |  | 
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| [34c43a] | 37 | #include "CodePatterns/Log.hpp" | 
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| [628b52] | 38 | #include "config.hpp" | 
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| [53c7fc] | 39 | #include "LinkedCell/linkedcell.hpp" | 
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|  | 40 | #include "LinkedCell/PointCloudAdaptor.hpp" | 
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| [628b52] | 41 | #include "molecule.hpp" | 
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| [53c7fc] | 42 | #include "Tesselation/boundary.hpp" | 
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| [d127c8] | 43 | #include "Tesselation/tesselation.hpp" | 
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| [628b52] | 44 | #include "World.hpp" | 
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| [97ebf8] | 45 |  | 
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|  | 46 | #include <iostream> | 
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|  | 47 | #include <string> | 
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|  | 48 |  | 
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| [1fd675] | 49 | #include "Actions/TesselationAction/ConvexEnvelopeAction.hpp" | 
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| [8ae5d5] | 50 |  | 
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| [ce7fdc] | 51 | using namespace MoleCuilder; | 
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|  | 52 |  | 
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| [1fd675] | 53 | // and construct the stuff | 
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|  | 54 | #include "ConvexEnvelopeAction.def" | 
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|  | 55 | #include "Action_impl_pre.hpp" | 
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|  | 56 | /** =========== define the function ====================== */ | 
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| [b5b01e] | 57 | ActionState::ptr TesselationConvexEnvelopeAction::performCall() { | 
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| [97ebf8] | 58 | molecule * mol = NULL; | 
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| [8ae5d5] | 59 | bool Success = true; | 
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| [f6bd32] | 60 | config *configuration = World::getInstance().getConfig(); | 
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| [97ebf8] | 61 |  | 
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| [8ae5d5] | 62 | for (World::MoleculeSelectionIterator iter = World::getInstance().beginMoleculeSelection(); iter != World::getInstance().endMoleculeSelection(); ++iter) { | 
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|  | 63 | mol = iter->second; | 
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| [97ebf8] | 64 | class Tesselation *TesselStruct = NULL; | 
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| [6bd7e0] | 65 | const LinkedCell_deprecated *LCList = NULL; | 
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| [47d041] | 66 | LOG(0, "Evaluating volume of the convex envelope."); | 
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| [f10b0c] | 67 | LOG(1, "Storing tecplot convex data in " << params.filenameConvex.get() << "."); | 
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|  | 68 | LOG(1, "Storing tecplot non-convex data in " << params.filenameNonConvex.get() << "."); | 
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| [caa06ef] | 69 | PointCloudAdaptor<molecule> cloud(mol, mol->name); | 
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| [6bd7e0] | 70 | LCList = new LinkedCell_deprecated(cloud, 100.); | 
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| [25b9d2] | 71 | //Boundaries *BoundaryPoints = NULL; | 
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| [bdc91e] | 72 | //FindConvexBorder(mol, BoundaryPoints, TesselStruct, LCList, argv[argptr]); | 
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| [97ebf8] | 73 | // TODO: Beide Funktionen sollten streams anstelle des Filenamen benutzen, besser fuer unit tests | 
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| [f10b0c] | 74 | FindNonConvexBorder(mol, TesselStruct, LCList, 50., params.filenameNonConvex.get().string().c_str()); | 
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| [97ebf8] | 75 | //RemoveAllBoundaryPoints(TesselStruct, mol, argv[argptr]); | 
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| [f10b0c] | 76 | const double volumedifference = ConvexizeNonconvexEnvelope(TesselStruct, mol, params.filenameConvex.get().string().c_str()); | 
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| [ee0032] | 77 | const double clustervolume = TesselStruct->getVolumeOfConvexEnvelope(configuration->GetIsAngstroem()); | 
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| [47d041] | 78 | LOG(0, "The tesselated volume area is " << clustervolume << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3."); | 
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|  | 79 | LOG(0, "The non-convex tesselated volume area is " << clustervolume-volumedifference << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3."); | 
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| [97ebf8] | 80 | delete(TesselStruct); | 
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|  | 81 | delete(LCList); | 
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|  | 82 | } | 
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| [8ae5d5] | 83 | if (Success) | 
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|  | 84 | return Action::success; | 
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|  | 85 | else | 
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|  | 86 | return Action::failure; | 
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| [97ebf8] | 87 | } | 
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|  | 88 |  | 
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| [b5b01e] | 89 | ActionState::ptr TesselationConvexEnvelopeAction::performUndo(ActionState::ptr _state) { | 
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| [97ebf8] | 90 | //  TesselationConvexEnvelopeState *state = assert_cast<TesselationConvexEnvelopeState*>(_state.get()); | 
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|  | 91 |  | 
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|  | 92 | //  string newName = state->mol->getName(); | 
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|  | 93 | //  state->mol->setName(state->lastName); | 
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|  | 94 |  | 
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|  | 95 | return Action::failure; | 
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|  | 96 | } | 
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|  | 97 |  | 
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| [b5b01e] | 98 | ActionState::ptr TesselationConvexEnvelopeAction::performRedo(ActionState::ptr _state){ | 
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| [97ebf8] | 99 | // Undo and redo have to do the same for this action | 
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|  | 100 | return performUndo(_state); | 
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|  | 101 | } | 
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|  | 102 |  | 
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|  | 103 | bool TesselationConvexEnvelopeAction::canUndo() { | 
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|  | 104 | return false; | 
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|  | 105 | } | 
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|  | 106 |  | 
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|  | 107 | bool TesselationConvexEnvelopeAction::shouldUndo() { | 
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|  | 108 | return false; | 
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|  | 109 | } | 
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| [1fd675] | 110 | /** =========== end of function ====================== */ | 
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