| [bcf653] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2010 University of Bonn. All rights reserved.
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 | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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 | 6 |  */
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 | 7 | 
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| [97ebf8] | 8 | /*
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 | 9 |  * ConvexEnvelopeAction.cpp
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 | 10 |  *
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 | 11 |  *  Created on: May 12, 2010
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 | 12 |  *      Author: heber
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 | 13 |  */
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 | 14 | 
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| [bf3817] | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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| [112b09] | 21 | 
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| [628b52] | 22 | #include "boundary.hpp"
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| [34c43a] | 23 | #include "CodePatterns/Log.hpp"
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 | 24 | #include "CodePatterns/Verbose.hpp"
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| [628b52] | 25 | #include "config.hpp"
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 | 26 | #include "linkedcell.hpp"
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 | 27 | #include "molecule.hpp"
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| [34c43a] | 28 | #include "PointCloudAdaptor.hpp"
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| [88b400] | 29 | #include "tesselation.hpp"
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| [628b52] | 30 | #include "World.hpp"
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| [97ebf8] | 31 | 
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 | 32 | #include <iostream>
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 | 33 | #include <string>
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 | 34 | 
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 | 35 | using namespace std;
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 | 36 | 
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| [1fd675] | 37 | #include "Actions/TesselationAction/ConvexEnvelopeAction.hpp"
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| [8ae5d5] | 38 | 
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| [1fd675] | 39 | // and construct the stuff
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 | 40 | #include "ConvexEnvelopeAction.def"
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 | 41 | #include "Action_impl_pre.hpp"
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 | 42 | /** =========== define the function ====================== */
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| [97ebf8] | 43 | Action::state_ptr TesselationConvexEnvelopeAction::performCall() {
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 | 44 |   molecule * mol = NULL;
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| [8ae5d5] | 45 |   bool Success = true;
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| [f6bd32] | 46 |   config *configuration = World::getInstance().getConfig();
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| [97ebf8] | 47 | 
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| [1fd675] | 48 |   // obtain information
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 | 49 |   getParametersfromValueStorage();
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| [97ebf8] | 50 | 
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| [8ae5d5] | 51 |   for (World::MoleculeSelectionIterator iter = World::getInstance().beginMoleculeSelection(); iter != World::getInstance().endMoleculeSelection(); ++iter) {
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 | 52 |     mol = iter->second;
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| [97ebf8] | 53 |     class Tesselation *TesselStruct = NULL;
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 | 54 |     const LinkedCell *LCList = NULL;
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 | 55 |     DoLog(0) && (Log() << Verbose(0) << "Evaluating volume of the convex envelope.");
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| [1fd675] | 56 |     DoLog(1) && (Log() << Verbose(1) << "Storing tecplot convex data in " << params.filenameConvex << "." << endl);
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 | 57 |     DoLog(1) && (Log() << Verbose(1) << "Storing tecplot non-convex data in " << params.filenameNonConvex << "." << endl);
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| [caa06ef] | 58 |     PointCloudAdaptor<molecule> cloud(mol, mol->name);
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| [34c43a] | 59 |     LCList = new LinkedCell(cloud, 100.);
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| [25b9d2] | 60 |     //Boundaries *BoundaryPoints = NULL;
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| [bdc91e] | 61 |     //FindConvexBorder(mol, BoundaryPoints, TesselStruct, LCList, argv[argptr]);
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| [97ebf8] | 62 |     // TODO: Beide Funktionen sollten streams anstelle des Filenamen benutzen, besser fuer unit tests
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| [e4afb4] | 63 |     FindNonConvexBorder(mol, TesselStruct, LCList, 50., params.filenameNonConvex.string().c_str());
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| [97ebf8] | 64 |     //RemoveAllBoundaryPoints(TesselStruct, mol, argv[argptr]);
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| [e4afb4] | 65 |     const double volumedifference = ConvexizeNonconvexEnvelope(TesselStruct, mol, params.filenameConvex.string().c_str());
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| [f6bd32] | 66 |     const double clustervolume = VolumeOfConvexEnvelope(TesselStruct, configuration);
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 | 67 |     DoLog(0) && (Log() << Verbose(0) << "The tesselated volume area is " << clustervolume << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3." << endl);
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 | 68 |     DoLog(0) && (Log() << Verbose(0) << "The non-convex tesselated volume area is " << clustervolume-volumedifference << " " << (configuration->GetIsAngstroem() ? "angstrom" : "atomiclength") << "^3." << endl);
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| [97ebf8] | 69 |     delete(TesselStruct);
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 | 70 |     delete(LCList);
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 | 71 |   }
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| [8ae5d5] | 72 |   if (Success)
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 | 73 |     return Action::success;
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 | 74 |   else
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 | 75 |     return Action::failure;
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| [97ebf8] | 76 | }
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 | 77 | 
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 | 78 | Action::state_ptr TesselationConvexEnvelopeAction::performUndo(Action::state_ptr _state) {
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 | 79 | //  TesselationConvexEnvelopeState *state = assert_cast<TesselationConvexEnvelopeState*>(_state.get());
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 | 80 | 
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 | 81 | //  string newName = state->mol->getName();
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 | 82 | //  state->mol->setName(state->lastName);
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 | 83 | 
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 | 84 |   return Action::failure;
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 | 85 | }
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 | 86 | 
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 | 87 | Action::state_ptr TesselationConvexEnvelopeAction::performRedo(Action::state_ptr _state){
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 | 88 |   // Undo and redo have to do the same for this action
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 | 89 |   return performUndo(_state);
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 | 90 | }
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 | 91 | 
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 | 92 | bool TesselationConvexEnvelopeAction::canUndo() {
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 | 93 |   return false;
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 | 94 | }
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 | 95 | 
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 | 96 | bool TesselationConvexEnvelopeAction::shouldUndo() {
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 | 97 |   return false;
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 | 98 | }
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| [1fd675] | 99 | /** =========== end of function ====================== */
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