1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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5 | *
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6 | *
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7 | * This file is part of MoleCuilder.
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8 | *
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9 | * MoleCuilder is free software: you can redistribute it and/or modify
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10 | * it under the terms of the GNU General Public License as published by
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11 | * the Free Software Foundation, either version 2 of the License, or
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12 | * (at your option) any later version.
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13 | *
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14 | * MoleCuilder is distributed in the hope that it will be useful,
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15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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17 | * GNU General Public License for more details.
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18 | *
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19 | * You should have received a copy of the GNU General Public License
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20 | * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
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21 | */
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22 |
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23 | /*
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24 | * VerletIntegrationAction.cpp
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25 | *
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26 | * Created on: May 10, 2010
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27 | * Author: heber
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28 | */
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29 |
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30 | // include config.h
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31 | #ifdef HAVE_CONFIG_H
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32 | #include <config.h>
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33 | #endif
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34 |
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35 | #include "CodePatterns/MemDebug.hpp"
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36 |
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37 | #include "Atom/atom.hpp"
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38 | #include "Atom/AtomSet.hpp"
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39 | #include "CodePatterns/Log.hpp"
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40 | #include "CodePatterns/Verbose.hpp"
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41 | #include "Dynamics/VerletForceIntegration.hpp"
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42 | #include "molecule.hpp"
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43 | #include "World.hpp"
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44 | #include "WorldTime.hpp"
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45 |
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46 | #include <vector>
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47 | #include <iostream>
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48 | #include <fstream>
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49 | #include <string>
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50 |
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51 | #include "Actions/MoleculeAction/VerletIntegrationAction.hpp"
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52 |
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53 | using namespace MoleCuilder;
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54 |
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55 | // and construct the stuff
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56 | #include "VerletIntegrationAction.def"
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57 | #include "Action_impl_pre.hpp"
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58 | /** =========== define the function ====================== */
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59 | Action::state_ptr MoleculeVerletIntegrationAction::performCall() {
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60 | // TODO: sollte besser stream nutzen, nicht filename direkt (es sei denn, ist prefix), besser fuer unit test
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61 | AtomSetMixin<std::vector<atom *> > set(World::getInstance().getSelectedAtoms());
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62 | // we always operate relative to current time step
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63 | size_t CurrentStep = WorldTime::getInstance().getTime();
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64 | VerletForceIntegration<std::vector<atom *> > Verlet(set, params.Deltat.get(), true);
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65 | // parse forces into next step
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66 | if (!params.forcesfile.get().string().empty()) {
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67 | LOG(1, "Parsing forces file.");
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68 | if (!Verlet.parseForcesFile(params.forcesfile.get().string().c_str(), CurrentStep))
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69 | LOG(2, "File " << params.forcesfile.get() << " not found.");
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70 | else
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71 | LOG(2, "File " << params.forcesfile.get() << " found and parsed.");
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72 | }
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73 | // perform velocity verlet update
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74 | LOG(1, "Verlet integrating.");
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75 | if (!Verlet(CurrentStep+1, 1, 0, params.FixedCenterOfMass.get()))
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76 | ELOG(1, "Velocity verlet failed.");
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77 | else
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78 | LOG(2, "DEBUG: Successfully performed updates on velocity and position.");
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79 | // increment to next time step
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80 | World::getInstance().setTime(CurrentStep+1);
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81 |
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82 | return Action::success;
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83 | }
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84 |
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85 | Action::state_ptr MoleculeVerletIntegrationAction::performUndo(Action::state_ptr _state) {
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86 | // MoleculeVerletIntegrationState *state = assert_cast<MoleculeVerletIntegrationState*>(_state.get());
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87 |
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88 | // string newName = state->mol->getName();
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89 | // state->mol->setName(state->lastName);
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90 |
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91 | return Action::failure;
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92 | }
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93 |
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94 | Action::state_ptr MoleculeVerletIntegrationAction::performRedo(Action::state_ptr _state){
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95 | return Action::failure;
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96 | }
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97 |
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98 | bool MoleculeVerletIntegrationAction::canUndo() {
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99 | return true;
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100 | }
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101 |
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102 | bool MoleculeVerletIntegrationAction::shouldUndo() {
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103 | return true;
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104 | }
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105 | /** =========== end of function ====================== */
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