1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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6 | */
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7 |
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8 | /*
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9 | * VerletIntegrationAction.cpp
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10 | *
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11 | * Created on: May 10, 2010
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12 | * Author: heber
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13 | */
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14 |
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15 | // include config.h
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16 | #ifdef HAVE_CONFIG_H
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17 | #include <config.h>
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18 | #endif
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19 |
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20 | #include "CodePatterns/MemDebug.hpp"
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21 |
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22 | #include "atom.hpp"
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23 | #include "AtomSet.hpp"
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24 | #include "CodePatterns/Log.hpp"
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25 | #include "CodePatterns/Verbose.hpp"
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26 | #include "Dynamics/VerletForceIntegration.hpp"
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27 | #include "molecule.hpp"
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28 | #include "World.hpp"
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29 |
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30 | #include <vector>
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31 | #include <iostream>
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32 | #include <fstream>
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33 | #include <string>
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34 |
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35 | #include "Actions/MoleculeAction/VerletIntegrationAction.hpp"
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36 |
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37 | using namespace MoleCuilder;
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38 |
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39 | // and construct the stuff
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40 | #include "VerletIntegrationAction.def"
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41 | #include "Action_impl_pre.hpp"
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42 | /** =========== define the function ====================== */
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43 | Action::state_ptr MoleculeVerletIntegrationAction::performCall() {
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44 | // obtain information
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45 | getParametersfromValueStorage();
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46 |
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47 |
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48 | LOG(1, "Parsing forces file and Verlet integrating.");
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49 | // TODO: sollte besser stream nutzen, nicht filename direkt (es sei denn, ist prefix), besser fuer unit test
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50 | char outputname[MAXSTRINGSIZE];
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51 | strcpy(outputname, params.forcesfile.string().c_str());
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52 | AtomSetMixin<std::vector<atom *> > set(World::getInstance().getSelectedAtoms());
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53 | for (int step = 0; step < params.MDSteps; ++step) {
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54 | VerletForceIntegration<std::vector<atom *> > Verlet(set, params.Deltat, step, false);
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55 | if (!Verlet(outputname, 1, 0, params.FixedCenterOfMass))
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56 | LOG(2, "File " << params.forcesfile << " not found.");
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57 | else
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58 | LOG(2, "File " << params.forcesfile << " found and parsed.");
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59 | }
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60 |
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61 | return Action::success;
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62 | }
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63 |
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64 | Action::state_ptr MoleculeVerletIntegrationAction::performUndo(Action::state_ptr _state) {
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65 | // MoleculeVerletIntegrationState *state = assert_cast<MoleculeVerletIntegrationState*>(_state.get());
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66 |
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67 | // string newName = state->mol->getName();
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68 | // state->mol->setName(state->lastName);
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69 |
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70 | return Action::failure;
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71 | }
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72 |
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73 | Action::state_ptr MoleculeVerletIntegrationAction::performRedo(Action::state_ptr _state){
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74 | return Action::failure;
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75 | }
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76 |
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77 | bool MoleculeVerletIntegrationAction::canUndo() {
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78 | return true;
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79 | }
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80 |
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81 | bool MoleculeVerletIntegrationAction::shouldUndo() {
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82 | return true;
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83 | }
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84 | /** =========== end of function ====================== */
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