[bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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| 4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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[97ebf8] | 8 | /*
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| 9 | * LinearInterpolationofTrajectoriesAction.cpp
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| 10 | *
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| 11 | * Created on: May 10, 2010
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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[bf3817] | 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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[112b09] | 20 | #include "Helpers/MemDebug.hpp"
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| 21 |
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[97ebf8] | 22 | #include "Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp"
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[0430e3] | 23 | #include "Actions/ActionRegistry.hpp"
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[1a3c26] | 24 | #include "atom.hpp"
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| 25 | #include "defs.hpp"
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[952f38] | 26 | #include "Helpers/Log.hpp"
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[1a3c26] | 27 | #include "molecule.hpp"
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[952f38] | 28 | #include "Helpers/Verbose.hpp"
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[1a3c26] | 29 | #include "World.hpp"
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[97ebf8] | 30 |
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| 31 | #include <iostream>
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| 32 | #include <fstream>
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| 33 | #include <string>
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| 34 |
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| 35 | using namespace std;
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| 36 |
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| 37 | #include "UIElements/UIFactory.hpp"
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| 38 | #include "UIElements/Dialog.hpp"
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[861874] | 39 | #include "Actions/ValueStorage.hpp"
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[97ebf8] | 40 |
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| 41 |
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| 42 | /****** MoleculeLinearInterpolationofTrajectoriesAction *****/
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| 43 |
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| 44 | // memento to remember the state when undoing
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| 45 |
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| 46 | //class MoleculeLinearInterpolationofTrajectoriesState : public ActionState {
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| 47 | //public:
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| 48 | // MoleculeLinearInterpolationofTrajectoriesState(molecule* _mol,std::string _lastName) :
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| 49 | // mol(_mol),
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| 50 | // lastName(_lastName)
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| 51 | // {}
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| 52 | // molecule* mol;
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| 53 | // std::string lastName;
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| 54 | //};
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| 55 |
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| 56 | const char MoleculeLinearInterpolationofTrajectoriesAction::NAME[] = "linear-interpolate";
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| 57 |
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| 58 | MoleculeLinearInterpolationofTrajectoriesAction::MoleculeLinearInterpolationofTrajectoriesAction() :
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| 59 | Action(NAME)
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| 60 | {}
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| 61 |
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| 62 | MoleculeLinearInterpolationofTrajectoriesAction::~MoleculeLinearInterpolationofTrajectoriesAction()
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| 63 | {}
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| 64 |
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[1a3c26] | 65 | void MoleculeLinearInterpolationofTrajectories(std::string &filename, int start, int end, bool IdMapping) {
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| 66 | ValueStorage::getInstance().setCurrentValue(MoleculeLinearInterpolationofTrajectoriesAction::NAME, filename);
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| 67 | ValueStorage::getInstance().setCurrentValue("start-step", start);
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| 68 | ValueStorage::getInstance().setCurrentValue("end-step", end);
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| 69 | ValueStorage::getInstance().setCurrentValue("id-mapping", IdMapping);
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| 70 | ActionRegistry::getInstance().getActionByName(MoleculeLinearInterpolationofTrajectoriesAction::NAME)->call(Action::NonInteractive);
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| 71 | };
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| 72 |
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[047878] | 73 | Dialog* MoleculeLinearInterpolationofTrajectoriesAction::fillDialog(Dialog *dialog) {
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| 74 | ASSERT(dialog,"No Dialog given when filling action dialog");
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[620fe5] | 75 |
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[c89fb4] | 76 | dialog->queryString(NAME, ValueStorage::getInstance().getDescription(NAME));
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| 77 | dialog->queryInt("start-step", ValueStorage::getInstance().getDescription("start-step"));
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| 78 | dialog->queryInt("end-step", ValueStorage::getInstance().getDescription("end-step"));
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| 79 | dialog->queryBoolean("id-mapping", ValueStorage::getInstance().getDescription("id-mapping"));
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[620fe5] | 80 |
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| 81 | return dialog;
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| 82 | }
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| 83 |
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[97ebf8] | 84 | Action::state_ptr MoleculeLinearInterpolationofTrajectoriesAction::performCall() {
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| 85 | string filename;
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| 86 | molecule *mol = NULL;
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| 87 | int start = -1;
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| 88 | int end = -1;
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| 89 | bool IdMapping = true;
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| 90 |
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[620fe5] | 91 | ValueStorage::getInstance().queryCurrentValue(NAME, filename);
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| 92 | ValueStorage::getInstance().queryCurrentValue("start-step", start);
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| 93 | ValueStorage::getInstance().queryCurrentValue("end-step", end);
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| 94 | ValueStorage::getInstance().queryCurrentValue("id-mapping", IdMapping);
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[97ebf8] | 95 |
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[620fe5] | 96 | for (World::MoleculeSelectionIterator iter = World::getInstance().beginMoleculeSelection(); iter != World::getInstance().endMoleculeSelection(); ++iter) {
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| 97 | mol = iter->second;
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[97ebf8] | 98 | DoLog(1) && (Log() << Verbose(1) << "Linear interpolation between configuration " << start << " and " << end << "." << endl);
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| 99 | if (IdMapping)
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| 100 | DoLog(1) && (Log() << Verbose(1) << "Using Identity for the permutation map." << endl);
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[35b698] | 101 | if (!mol->LinearInterpolationBetweenConfiguration(start, end, filename, *(World::getInstance().getConfig()), IdMapping))
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| 102 | DoLog(2) && (Log() << Verbose(2) << "Could not store " << filename << " files." << endl);
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[97ebf8] | 103 | else
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| 104 | DoLog(2) && (Log() << Verbose(2) << "Steps created and " << filename << " files stored." << endl);
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| 105 | }
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[620fe5] | 106 | return Action::success;
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[97ebf8] | 107 | }
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| 108 |
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| 109 | Action::state_ptr MoleculeLinearInterpolationofTrajectoriesAction::performUndo(Action::state_ptr _state) {
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| 110 | // MoleculeLinearInterpolationofTrajectoriesState *state = assert_cast<MoleculeLinearInterpolationofTrajectoriesState*>(_state.get());
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| 111 |
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| 112 | // string newName = state->mol->getName();
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| 113 | // state->mol->setName(state->lastName);
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| 114 |
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| 115 | return Action::failure;
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| 116 | }
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| 117 |
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| 118 | Action::state_ptr MoleculeLinearInterpolationofTrajectoriesAction::performRedo(Action::state_ptr _state){
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| 119 | // Undo and redo have to do the same for this action
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| 120 | return performUndo(_state);
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| 121 | }
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| 122 |
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| 123 | bool MoleculeLinearInterpolationofTrajectoriesAction::canUndo() {
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| 124 | return false;
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| 125 | }
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| 126 |
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| 127 | bool MoleculeLinearInterpolationofTrajectoriesAction::shouldUndo() {
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| 128 | return false;
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| 129 | }
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| 130 |
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| 131 | const string MoleculeLinearInterpolationofTrajectoriesAction::getName() {
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| 132 | return NAME;
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| 133 | }
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