1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010 University of Bonn. All rights reserved.
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5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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6 | */
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7 |
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8 | /*
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9 | * FillVoidWithMoleculeAction.cpp
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10 | *
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11 | * Created on: May 10, 2010
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12 | * Author: heber
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13 | */
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14 |
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15 | // include config.h
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16 | #ifdef HAVE_CONFIG_H
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17 | #include <config.h>
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18 | #endif
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19 |
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20 | #include "Helpers/MemDebug.hpp"
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21 |
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22 | #include "atom.hpp"
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23 | #include "bondgraph.hpp"
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24 | #include "boundary.hpp"
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25 | #include "config.hpp"
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26 | #include "molecule.hpp"
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27 | #include "Helpers/Verbose.hpp"
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28 | #include "World.hpp"
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29 |
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30 | #include "Parser/MpqcParser.hpp"
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31 | #include "Parser/PcpParser.hpp"
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32 | #include "Parser/PdbParser.hpp"
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33 | #include "Parser/TremoloParser.hpp"
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34 | #include "Parser/XyzParser.hpp"
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35 | #include "Parser/FormatParserStorage.hpp"
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36 |
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37 | #include <iostream>
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38 | #include <string>
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39 |
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40 | using namespace std;
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41 |
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42 | #include "Actions/MoleculeAction/FillVoidWithMoleculeAction.hpp"
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43 |
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44 | // and construct the stuff
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45 | #include "FillVoidWithMoleculeAction.def"
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46 | #include "Action_impl_pre.hpp"
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47 | /** =========== define the function ====================== */
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48 | Action::state_ptr MoleculeFillVoidWithMoleculeAction::performCall() {
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49 |
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50 | // obtain information
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51 | getParametersfromValueStorage();
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52 |
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53 | DoLog(1) && (Log() << Verbose(1) << "Filling Box with water molecules, lengths(" << params.lengths[0] << "," << params.lengths[1] << "," << params.lengths[2] << "), distances (" << params.distances[0] << "," << params.distances[1] << "," << params.distances[2] << "), DoRotate " << params.DoRotate << "." << endl);
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54 | // construct water molecule
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55 | molecule *filler = World::getInstance().createMolecule();
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56 | std::string FilenameSuffix = params.fillername.string().substr(params.fillername.string().find_last_of('.')+1, params.fillername.string().length());
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57 | ifstream input;
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58 | input.open(params.fillername.string().c_str());
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59 | switch (FormatParserStorage::getInstance().getTypeFromSuffix(FilenameSuffix)) {
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60 | case mpqc:
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61 | {
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62 | MpqcParser mpqcparser;
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63 | mpqcparser.load(&input);
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64 | break;
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65 | }
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66 | case pcp:
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67 | {
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68 | PcpParser pcpparser;
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69 | pcpparser.load(&input);
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70 | break;
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71 | }
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72 | case pdb:
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73 | {
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74 | PdbParser pdbparser;
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75 | pdbparser.load(&input);
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76 | break;
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77 | }
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78 | case tremolo:
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79 | {
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80 | TremoloParser tremoloparser;
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81 | tremoloparser.load(&input);
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82 | break;
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83 | }
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84 | case xyz:
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85 | {
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86 | XyzParser xyzparser;
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87 | xyzparser.load(&input);
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88 | break;
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89 | }
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90 | default:
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91 | DoeLog(0) && (eLog()<< Verbose(0) << "Could not parse filler molecule from " << params.fillername << "." << endl);
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92 | break;
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93 | }
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94 | World::MoleculeIterator iter = World::getInstance().getMoleculeIter();
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95 | for (; iter != World::getInstance().moleculeEnd(); ++iter)
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96 | filler = *iter; // get last molecule
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97 | filler->SetNameFromFilename(params.fillername.string().c_str());
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98 | World::getInstance().getConfig()->BG->ConstructBondGraph(filler);
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99 |
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100 | // call routine
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101 | double distance[NDIM];
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102 | for (int i=0;i<NDIM;i++)
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103 | distance[i] = params.distances[i];
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104 | FillVoidWithMolecule(filler, *(World::getInstance().getConfig()), distance, params.lengths[0], params.lengths[1], params.lengths[2], params.DoRotate);
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105 |
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106 | return Action::success;
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107 | }
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108 |
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109 | Action::state_ptr MoleculeFillVoidWithMoleculeAction::performUndo(Action::state_ptr _state) {
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110 | // MoleculeFillVoidWithMoleculeState *state = assert_cast<MoleculeFillVoidWithMoleculeState*>(_state.get());
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111 |
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112 | // string newName = state->mol->getName();
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113 | // state->mol->setName(state->lastName);
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114 |
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115 | return Action::failure;
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116 | }
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117 |
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118 | Action::state_ptr MoleculeFillVoidWithMoleculeAction::performRedo(Action::state_ptr _state){
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119 | // Undo and redo have to do the same for this action
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120 | return performUndo(_state);
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121 | }
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122 |
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123 | bool MoleculeFillVoidWithMoleculeAction::canUndo() {
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124 | return false;
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125 | }
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126 |
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127 | bool MoleculeFillVoidWithMoleculeAction::shouldUndo() {
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128 | return false;
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129 | }
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130 | /** =========== end of function ====================== */
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