source: src/Actions/Makefile.am@ 1e1098

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 Candidate_v1.7.0 Candidate_v1.7.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 1e1098 was 39986b, checked in by Frederik Heber <heber@…>, 13 years ago

Added new MakroAction MolecularDynamicsAction.

  • this resides within fragmentation, as we perform the four steps ...
    • verlet-integration
    • fragmentation
    • fragmentation-automation
    • analyse-fragmentation-results ... for a given number of times, using ActionSequence::loop with steps.
  • outputs after every time integration step, controlled via DoOutput option.
  • action only instantiated if HAVE_JOBMARKET.
  • Property mode set to 100644
File size: 27.6 KB
RevLine 
[5079a0]1# PLEASE adhere to the alphabetical ordering in this Makefile!
2# Also indentation by a single tab
3
4ACTIONSSOURCE = \
[455573]5 Actions/Action.cpp \
6 Actions/ActionHistory.cpp \
7 Actions/ActionRegistry.cpp \
8 Actions/ActionSequence.cpp \
[3139b2]9 Actions/ActionTrait.cpp \
[455573]10 Actions/ErrorAction.cpp \
11 Actions/MakroAction.cpp \
12 Actions/ManipulateAtomsProcess.cpp \
13 Actions/MethodAction.cpp \
[48d3c0]14 Actions/OptionRegistry.cpp \
15 Actions/OptionTrait.cpp \
[455573]16 Actions/Process.cpp \
[57dd40]17 Actions/UndoRedoHelpers.cpp \
[a55e6f]18 Actions/Values.cpp
[455573]19
20ACTIONSHEADER = \
21 Actions/Action.hpp \
[e69c87]22 Actions/ActionExceptions.hpp \
[7159ed]23 Actions/Action_impl_header.hpp \
24 Actions/Action_impl_pre.hpp \
[48d3c0]25 Actions/Action_impl_undef.hpp \
[455573]26 Actions/ActionHistory.hpp \
27 Actions/ActionRegistry.hpp \
28 Actions/ActionSequence.hpp \
[3139b2]29 Actions/ActionTrait.hpp \
[24da48]30 Actions/ActionTraits.hpp \
[7159ed]31 Actions/AtomsCalculation.hpp \
32 Actions/AtomsCalculation_impl.hpp \
[455573]33 Actions/Calculation.hpp \
34 Actions/Calculation_impl.hpp \
35 Actions/ErrorAction.hpp \
[48d3c0]36 Actions/GlobalListOfActions.hpp \
[455573]37 Actions/MakroAction.hpp \
[9c1324]38 Actions/MakroAction_impl_header.hpp \
39 Actions/MakroAction_impl_pre.hpp \
[455573]40 Actions/ManipulateAtomsProcess.hpp \
41 Actions/MethodAction.hpp \
[48d3c0]42 Actions/OptionRegistry.hpp \
43 Actions/OptionTrait.hpp \
[455573]44 Actions/Process.hpp \
[c1ab1f]45 Actions/Reaction.hpp \
46 Actions/Reaction_impl.hpp \
47 Actions/Reaction_impl_header.hpp \
48 Actions/Reaction_impl_pre.hpp \
[57dd40]49 Actions/UndoRedoHelpers.hpp \
[a55e6f]50 Actions/Values.hpp
[455573]51
52ACTIONPROTOTYPESSOURCE = \
[5079a0]53 ${ANALYSISACTIONSOURCE} \
54 ${ATOMACTIONSOURCE} \
[f63e41]55 ${BONDACTIONSOURCE} \
[5079a0]56 ${CMDACTIONSOURCE} \
[a88452]57 ${FILLACTIONSOURCE} \
[5079a0]58 ${FRAGMENTATIONACTIONSOURCE} \
[d09093]59 ${GRAPHACTIONSOURCE} \
[5079a0]60 ${MOLECULEACTIONSOURCE} \
61 ${PARSERACTIONSOURCE} \
[3f9eba]62 ${RANDONNUMBERSSOURCE} \
[125002]63 ${SELECTIONATOMACTIONSOURCE} \
64 ${SELECTIONMOLECULEACTIONSOURCE} \
[70bce9]65 ${SELECTIONSHAPEACTIONSOURCE} \
[4dc309]66 ${SHAPEACTIONSOURCE} \
[5079a0]67 ${TESSELATIONACTIONSOURCE} \
[455573]68 $(UNDOACTIONSOURCE) \
69 ${WORLDACTIONSOURCE}
[5079a0]70
[455573]71ACTIONPROTOTYPESHEADER = \
[5079a0]72 ${ANALYSISACTIONHEADER} \
73 ${ATOMACTIONHEADER} \
[f63e41]74 ${BONDACTIONHEADER} \
[5079a0]75 ${CMDACTIONHEADER} \
[a88452]76 ${FILLACTIONHEADER} \
[5079a0]77 ${FRAGMENTATIONACTIONHEADER} \
[d09093]78 ${GRAPHACTIONHEADER} \
[5079a0]79 ${MOLECULEACTIONHEADER} \
80 ${PARSERACTIONHEADER} \
[3f9eba]81 ${RANDONNUMBERSHEADER} \
[125002]82 ${SELECTIONATOMACTIONHEADER} \
83 ${SELECTIONMOLECULEACTIONHEADER} \
[70bce9]84 ${SELECTIONSHAPEACTIONHEADER} \
[4dc309]85 ${SHAPEACTIONHEADER} \
[5079a0]86 ${TESSELATIONACTIONHEADER} \
[455573]87 $(UNDOACTIONHEADER) \
88 ${WORLDACTIONHEADER}
89
[dd8990]90ACTIONPROTOTYPESDEFS = \
91 ${ANALYSISACTIONDEFS} \
92 ${ATOMACTIONDEFS} \
[f63e41]93 ${BONDACTIONDEFS} \
[dd8990]94 ${CMDACTIONDEFS} \
[a88452]95 ${FILLACTIONDEFS} \
[dd8990]96 ${FRAGMENTATIONACTIONDEFS} \
97 ${GRAPHACTIONDEFS} \
98 ${MOLECULEACTIONDEFS} \
99 ${PARSERACTIONDEFS} \
100 ${RANDONNUMBERSDEFS} \
101 ${SELECTIONATOMACTIONDEFS} \
102 ${SELECTIONMOLECULEACTIONDEFS} \
[70bce9]103 ${SELECTIONSHAPEACTIONDEFS} \
[4dc309]104 ${SHAPEACTIONDEFS} \
[dd8990]105 ${TESSELATIONACTIONDEFS} \
106 $(UNDOACTIONDEFS) \
107 ${WORLDACTIONDEFS}
108
[5079a0]109ANALYSISACTIONSOURCE = \
[f89b45]110 Actions/AnalysisAction/CalculateBoundingBoxAction.cpp \
[55f299]111 Actions/AnalysisAction/CalculateCellVolumeAction.cpp \
112 Actions/AnalysisAction/CalculateMolarMassAction.cpp \
[455573]113 Actions/AnalysisAction/DipoleAngularCorrelationAction.cpp \
[208237b]114 Actions/AnalysisAction/DipoleCorrelationAction.cpp \
[455573]115 Actions/AnalysisAction/MolecularVolumeAction.cpp \
116 Actions/AnalysisAction/PairCorrelationAction.cpp \
117 Actions/AnalysisAction/PointCorrelationAction.cpp \
118 Actions/AnalysisAction/PrincipalAxisSystemAction.cpp \
119 Actions/AnalysisAction/SurfaceCorrelationAction.cpp
[5079a0]120ANALYSISACTIONHEADER = \
[f89b45]121 Actions/AnalysisAction/CalculateBoundingBoxAction.hpp \
[55f299]122 Actions/AnalysisAction/CalculateCellVolumeAction.hpp \
123 Actions/AnalysisAction/CalculateMolarMassAction.hpp \
[455573]124 Actions/AnalysisAction/DipoleAngularCorrelationAction.hpp \
[208237b]125 Actions/AnalysisAction/DipoleCorrelationAction.hpp \
[455573]126 Actions/AnalysisAction/MolecularVolumeAction.hpp \
127 Actions/AnalysisAction/PairCorrelationAction.hpp \
128 Actions/AnalysisAction/PointCorrelationAction.hpp \
129 Actions/AnalysisAction/PrincipalAxisSystemAction.hpp \
130 Actions/AnalysisAction/SurfaceCorrelationAction.hpp
[dd8990]131ANALYSISACTIONDEFS = \
[f89b45]132 Actions/AnalysisAction/CalculateBoundingBoxAction.def \
[55f299]133 Actions/AnalysisAction/CalculateCellVolumeAction.def \
134 Actions/AnalysisAction/CalculateMolarMassAction.def \
[dd8990]135 Actions/AnalysisAction/DipoleAngularCorrelationAction.def \
[208237b]136 Actions/AnalysisAction/DipoleCorrelationAction.def \
[dd8990]137 Actions/AnalysisAction/MolecularVolumeAction.def \
138 Actions/AnalysisAction/PairCorrelationAction.def \
139 Actions/AnalysisAction/PointCorrelationAction.def \
140 Actions/AnalysisAction/PrincipalAxisSystemAction.def \
141 Actions/AnalysisAction/SurfaceCorrelationAction.def
[5079a0]142
143ATOMACTIONSOURCE = \
[455573]144 Actions/AtomAction/AddAction.cpp \
145 Actions/AtomAction/ChangeElementAction.cpp \
146 Actions/AtomAction/RemoveAction.cpp \
147 Actions/AtomAction/RotateAroundOriginByAngleAction.cpp \
148 Actions/AtomAction/SaveSelectedAtomsAction.cpp \
149 Actions/AtomAction/TranslateAction.cpp
[5079a0]150ATOMACTIONHEADER = \
[455573]151 Actions/AtomAction/AddAction.hpp \
152 Actions/AtomAction/ChangeElementAction.hpp \
[3001c9]153 Actions/AtomAction/RemoveAction.hpp \
[455573]154 Actions/AtomAction/RotateAroundOriginByAngleAction.hpp \
155 Actions/AtomAction/SaveSelectedAtomsAction.hpp \
156 Actions/AtomAction/TranslateAction.hpp
[dd8990]157ATOMACTIONDEFS = \
158 Actions/AtomAction/AddAction.def \
159 Actions/AtomAction/ChangeElementAction.def \
160 Actions/AtomAction/RemoveAction.def \
161 Actions/AtomAction/RotateAroundOriginByAngleAction.def \
162 Actions/AtomAction/SaveSelectedAtomsAction.def \
163 Actions/AtomAction/TranslateAction.def
[5079a0]164
[f63e41]165BONDACTIONSOURCE = \
166 Actions/BondAction/BondAddAction.cpp \
167 Actions/BondAction/BondRemoveAction.cpp
168BONDACTIONHEADER = \
169 Actions/BondAction/BondAddAction.hpp \
170 Actions/BondAction/BondRemoveAction.hpp
171BONDACTIONDEFS = \
172 Actions/BondAction/BondAddAction.def \
173 Actions/BondAction/BondRemoveAction.def
174
[5079a0]175CMDACTIONSOURCE = \
[455573]176 Actions/CommandAction/BondLengthTableAction.cpp \
177 Actions/CommandAction/ElementDbAction.cpp \
178 Actions/CommandAction/FastParsingAction.cpp \
179 Actions/CommandAction/HelpAction.cpp \
[94d5ac6]180 Actions/CommandAction/HelpRedistributeAction.cpp \
[455573]181 Actions/CommandAction/VerboseAction.cpp \
182 Actions/CommandAction/VersionAction.cpp \
183 Actions/CommandAction/WarrantyAction.cpp
[5079a0]184CMDACTIONHEADER = \
[455573]185 Actions/CommandAction/BondLengthTableAction.hpp \
186 Actions/CommandAction/ElementDbAction.hpp \
187 Actions/CommandAction/FastParsingAction.hpp \
188 Actions/CommandAction/HelpAction.hpp \
[94d5ac6]189 Actions/CommandAction/HelpRedistributeAction.hpp \
[455573]190 Actions/CommandAction/VerboseAction.hpp \
191 Actions/CommandAction/VersionAction.hpp \
192 Actions/CommandAction/WarrantyAction.hpp
[dd8990]193CMDACTIONDEFS = \
194 Actions/CommandAction/BondLengthTableAction.def \
195 Actions/CommandAction/ElementDbAction.def \
196 Actions/CommandAction/FastParsingAction.def \
197 Actions/CommandAction/HelpAction.def \
[94d5ac6]198 Actions/CommandAction/HelpRedistributeAction.def \
[dd8990]199 Actions/CommandAction/VerboseAction.def \
200 Actions/CommandAction/VersionAction.def \
201 Actions/CommandAction/WarrantyAction.def
[5079a0]202
[a88452]203FILLACTIONSOURCE = \
[2db053]204 Actions/FillAction/FillRegularGridAction.cpp \
[09eaac]205 Actions/FillAction/FillSurfaceAction.cpp
[a88452]206FILLACTIONHEADER = \
[2db053]207 Actions/FillAction/FillRegularGridAction.hpp \
[09eaac]208 Actions/FillAction/FillSurfaceAction.hpp
[a88452]209FILLACTIONDEFS = \
[2db053]210 Actions/FillAction/FillRegularGridAction.def \
[09eaac]211 Actions/FillAction/FillSurfaceAction.def
[a88452]212
213
[5079a0]214FRAGMENTATIONACTIONSOURCE = \
[5589e7e]215 Actions/FragmentationAction/FragmentationAction.cpp \
[a3427f]216 Actions/FragmentationAction/AnalyseFragmentationResultsAction.cpp \
[5589e7e]217 Actions/FragmentationAction/StoreSaturatedFragmentAction.cpp
[5079a0]218FRAGMENTATIONACTIONHEADER = \
[5589e7e]219 Actions/FragmentationAction/FragmentationAction.hpp \
[a3427f]220 Actions/FragmentationAction/AnalyseFragmentationResultsAction.hpp \
[5589e7e]221 Actions/FragmentationAction/StoreSaturatedFragmentAction.hpp
[dd8990]222FRAGMENTATIONACTIONDEFS = \
[5589e7e]223 Actions/FragmentationAction/FragmentationAction.def \
[a3427f]224 Actions/FragmentationAction/AnalyseFragmentationResultsAction.def \
[5589e7e]225 Actions/FragmentationAction/StoreSaturatedFragmentAction.def
[004d5c]226
227if CONDJOBMARKET
228FRAGMENTATIONACTIONSOURCE += \
[bae7bc]229 Actions/FragmentationAction/FragmentationAutomationAction.cpp \
[39986b]230 Actions/FragmentationAction/MolecularDynamicsAction.cpp \
[bae7bc]231 Actions/FragmentationAction/ParseFragmentJobsAction.cpp
[004d5c]232FRAGMENTATIONACTIONHEADER += \
[bae7bc]233 Actions/FragmentationAction/FragmentationAutomationAction.hpp \
[39986b]234 Actions/FragmentationAction/MolecularDynamicsAction.hpp \
[bae7bc]235 Actions/FragmentationAction/ParseFragmentJobsAction.hpp
[004d5c]236FRAGMENTATIONACTIONDEFS += \
[bae7bc]237 Actions/FragmentationAction/FragmentationAutomationAction.def \
[39986b]238 Actions/FragmentationAction/MolecularDynamicsAction.def \
[bae7bc]239 Actions/FragmentationAction/ParseFragmentJobsAction.def
[004d5c]240endif
[d09093]241
[48d20d]242if CONDLEVMAR
243FRAGMENTATIONACTIONSOURCE += \
244 Actions/FragmentationAction/FitPotentialAction.cpp
245FRAGMENTATIONACTIONHEADER += \
246 Actions/FragmentationAction/FitPotentialAction.hpp
247FRAGMENTATIONACTIONDEFS += \
248 Actions/FragmentationAction/FitPotentialAction.def
249endif
250
251
[d09093]252GRAPHACTIONSOURCE = \
[455573]253 Actions/GraphAction/CreateAdjacencyAction.cpp \
254 Actions/GraphAction/DepthFirstSearchAction.cpp \
[560cbf]255 Actions/GraphAction/DestroyAdjacencyAction.cpp \
[22b786]256 Actions/GraphAction/SubgraphDissectionAction.cpp \
257 Actions/GraphAction/UpdateMoleculesAction.cpp
[d09093]258GRAPHACTIONHEADER = \
[455573]259 Actions/GraphAction/CreateAdjacencyAction.hpp \
260 Actions/GraphAction/DepthFirstSearchAction.hpp \
[560cbf]261 Actions/GraphAction/DestroyAdjacencyAction.hpp \
[22b786]262 Actions/GraphAction/SubgraphDissectionAction.hpp \
263 Actions/GraphAction/UpdateMoleculesAction.hpp
[dd8990]264GRAPHACTIONDEFS = \
265 Actions/GraphAction/CreateAdjacencyAction.def \
266 Actions/GraphAction/DepthFirstSearchAction.def \
[560cbf]267 Actions/GraphAction/DestroyAdjacencyAction.def \
[22b786]268 Actions/GraphAction/SubgraphDissectionAction.def \
269 Actions/GraphAction/UpdateMoleculesAction.def
[5079a0]270
271MOLECULEACTIONSOURCE = \
[455573]272 Actions/MoleculeAction/BondFileAction.cpp \
[8b886f]273 Actions/MoleculeAction/ChangeBondAngleAction.cpp \
[455573]274 Actions/MoleculeAction/ChangeNameAction.cpp \
275 Actions/MoleculeAction/CopyAction.cpp \
276 Actions/MoleculeAction/FillWithMoleculeAction.cpp \
277 Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp \
278 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp \
279 Actions/MoleculeAction/LoadAction.cpp \
280 Actions/MoleculeAction/RotateAroundSelfByAngleAction.cpp \
281 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp \
282 Actions/MoleculeAction/SaveSelectedMoleculesAction.cpp \
283 Actions/MoleculeAction/SaveAdjacencyAction.cpp \
284 Actions/MoleculeAction/SaveBondsAction.cpp \
285 Actions/MoleculeAction/SaveTemperatureAction.cpp \
[3a51bd]286 Actions/MoleculeAction/StretchBondAction.cpp \
[455573]287 Actions/MoleculeAction/SuspendInWaterAction.cpp \
288 Actions/MoleculeAction/VerletIntegrationAction.cpp
[5079a0]289MOLECULEACTIONHEADER = \
[455573]290 Actions/MoleculeAction/BondFileAction.hpp \
[8b886f]291 Actions/MoleculeAction/ChangeBondAngleAction.hpp \
[455573]292 Actions/MoleculeAction/ChangeNameAction.hpp \
293 Actions/MoleculeAction/CopyAction.hpp \
294 Actions/MoleculeAction/FillWithMoleculeAction.hpp \
295 Actions/MoleculeAction/FillVoidWithMoleculeAction.hpp \
296 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp \
[3001c9]297 Actions/MoleculeAction/LoadAction.hpp \
[455573]298 Actions/MoleculeAction/RotateAroundSelfByAngleAction.hpp \
299 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.hpp \
300 Actions/MoleculeAction/SaveSelectedMoleculesAction.hpp \
301 Actions/MoleculeAction/SaveAdjacencyAction.hpp \
302 Actions/MoleculeAction/SaveBondsAction.hpp \
303 Actions/MoleculeAction/SaveTemperatureAction.hpp \
[3a51bd]304 Actions/MoleculeAction/StretchBondAction.hpp \
[455573]305 Actions/MoleculeAction/SuspendInWaterAction.hpp \
306 Actions/MoleculeAction/VerletIntegrationAction.hpp
[dd8990]307MOLECULEACTIONDEFS = \
308 Actions/MoleculeAction/BondFileAction.def \
[8b886f]309 Actions/MoleculeAction/ChangeBondAngleAction.def \
[dd8990]310 Actions/MoleculeAction/ChangeNameAction.def \
311 Actions/MoleculeAction/CopyAction.def \
312 Actions/MoleculeAction/FillWithMoleculeAction.def \
313 Actions/MoleculeAction/FillVoidWithMoleculeAction.def \
314 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.def \
315 Actions/MoleculeAction/LoadAction.def \
316 Actions/MoleculeAction/RotateAroundSelfByAngleAction.def \
317 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.def \
318 Actions/MoleculeAction/SaveSelectedMoleculesAction.def \
319 Actions/MoleculeAction/SaveAdjacencyAction.def \
320 Actions/MoleculeAction/SaveBondsAction.def \
321 Actions/MoleculeAction/SaveTemperatureAction.def \
[3a51bd]322 Actions/MoleculeAction/StretchBondAction.def \
[dd8990]323 Actions/MoleculeAction/SuspendInWaterAction.def \
324 Actions/MoleculeAction/VerletIntegrationAction.def
[3f9eba]325
[9cff8b]326PARSERACTIONSOURCE = \
[455573]327 Actions/ParserAction/ParseTremoloPotentialsAction.cpp \
[531f27]328 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.cpp \
[41d023]329 Actions/ParserAction/SetParserParametersAction.cpp \
[81c980b]330 Actions/ParserAction/SetOutputFormatsAction.cpp \
331 Actions/ParserAction/SetTremoloAtomdataAction.cpp
[9cff8b]332PARSERACTIONHEADER = \
[455573]333 Actions/ParserAction/ParseTremoloPotentialsAction.hpp \
[531f27]334 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.hpp \
[41d023]335 Actions/ParserAction/SetParserParametersAction.hpp \
[81c980b]336 Actions/ParserAction/SetOutputFormatsAction.hpp \
337 Actions/ParserAction/SetTremoloAtomdataAction.hpp
[dd8990]338PARSERACTIONDEFS = \
339 Actions/ParserAction/ParseTremoloPotentialsAction.def \
[531f27]340 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.def \
[41d023]341 Actions/ParserAction/SetParserParametersAction.def \
[81c980b]342 Actions/ParserAction/SetOutputFormatsAction.def \
343 Actions/ParserAction/SetTremoloAtomdataAction.def
[9cff8b]344
[3f9eba]345RANDONNUMBERSSOURCE =\
[48d3c0]346 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.cpp \
347 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.cpp
[3f9eba]348RANDONNUMBERSHEADER =\
[48d3c0]349 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.hpp \
350 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.hpp
[dd8990]351RANDONNUMBERSDEFS =\
[48d3c0]352 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.def \
353 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.def
[5079a0]354
[125002]355SELECTIONATOMACTIONSOURCE = \
[48d3c0]356 Actions/SelectionAction/Atoms/AllAtomsAction.cpp \
[eff536]357 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.cpp \
[48d3c0]358 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.cpp \
359 Actions/SelectionAction/Atoms/AtomByElementAction.cpp \
360 Actions/SelectionAction/Atoms/AtomByIdAction.cpp \
[61c364]361 Actions/SelectionAction/Atoms/AtomByOrderAction.cpp \
[48d3c0]362 Actions/SelectionAction/Atoms/ClearAllAtomsAction.cpp \
[ebc499]363 Actions/SelectionAction/Atoms/InvertAtomsAction.cpp \
[48d3c0]364 Actions/SelectionAction/Atoms/NotAllAtomsAction.cpp \
[eff536]365 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.cpp \
[48d3c0]366 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.cpp \
367 Actions/SelectionAction/Atoms/NotAtomByElementAction.cpp \
[61c364]368 Actions/SelectionAction/Atoms/NotAtomByIdAction.cpp \
369 Actions/SelectionAction/Atoms/NotAtomByOrderAction.cpp
[125002]370SELECTIONATOMACTIONHEADER = \
[48d3c0]371 Actions/SelectionAction/Atoms/AllAtomsAction.hpp \
[eff536]372 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.hpp \
[48d3c0]373 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.hpp \
374 Actions/SelectionAction/Atoms/AtomByElementAction.hpp \
375 Actions/SelectionAction/Atoms/AtomByIdAction.hpp \
[61c364]376 Actions/SelectionAction/Atoms/AtomByOrderAction.hpp \
[48d3c0]377 Actions/SelectionAction/Atoms/ClearAllAtomsAction.hpp \
[ebc499]378 Actions/SelectionAction/Atoms/InvertAtomsAction.hpp \
[48d3c0]379 Actions/SelectionAction/Atoms/NotAllAtomsAction.hpp \
[eff536]380 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.hpp \
[48d3c0]381 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.hpp \
382 Actions/SelectionAction/Atoms/NotAtomByElementAction.hpp \
[61c364]383 Actions/SelectionAction/Atoms/NotAtomByIdAction.hpp \
384 Actions/SelectionAction/Atoms/NotAtomByOrderAction.hpp
[dd8990]385SELECTIONATOMACTIONDEFS = \
[48d3c0]386 Actions/SelectionAction/Atoms/AllAtomsAction.def \
[eff536]387 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.def \
[48d3c0]388 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.def \
389 Actions/SelectionAction/Atoms/AtomByElementAction.def \
390 Actions/SelectionAction/Atoms/AtomByIdAction.def \
[61c364]391 Actions/SelectionAction/Atoms/AtomByOrderAction.def \
[48d3c0]392 Actions/SelectionAction/Atoms/ClearAllAtomsAction.def \
[ebc499]393 Actions/SelectionAction/Atoms/InvertAtomsAction.def \
[48d3c0]394 Actions/SelectionAction/Atoms/NotAllAtomsAction.def \
[eff536]395 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.def \
[48d3c0]396 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.def \
397 Actions/SelectionAction/Atoms/NotAtomByElementAction.def \
[61c364]398 Actions/SelectionAction/Atoms/NotAtomByIdAction.def \
399 Actions/SelectionAction/Atoms/NotAtomByOrderAction.def
[e2009b]400
[125002]401SELECTIONMOLECULEACTIONSOURCE = \
[48d3c0]402 Actions/SelectionAction/Molecules/AllMoleculesAction.cpp \
403 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.cpp \
[ebc499]404 Actions/SelectionAction/Molecules/InvertMoleculesAction.cpp \
[48d3c0]405 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.cpp \
406 Actions/SelectionAction/Molecules/MoleculeByIdAction.cpp \
407 Actions/SelectionAction/Molecules/MoleculeByNameAction.cpp \
408 Actions/SelectionAction/Molecules/MoleculeByOrderAction.cpp \
409 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.cpp \
410 Actions/SelectionAction/Molecules/NotAllMoleculesAction.cpp \
411 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.cpp \
412 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.cpp \
413 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.cpp \
414 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.cpp \
415 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.cpp
[125002]416SELECTIONMOLECULEACTIONHEADER = \
[48d3c0]417 Actions/SelectionAction/Molecules/AllMoleculesAction.hpp \
418 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.hpp \
[ebc499]419 Actions/SelectionAction/Molecules/InvertMoleculesAction.hpp \
[48d3c0]420 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.hpp \
421 Actions/SelectionAction/Molecules/MoleculeByIdAction.hpp \
422 Actions/SelectionAction/Molecules/MoleculeByNameAction.hpp \
423 Actions/SelectionAction/Molecules/MoleculeByOrderAction.hpp \
424 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.hpp \
425 Actions/SelectionAction/Molecules/NotAllMoleculesAction.hpp \
426 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.hpp \
427 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.hpp \
428 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.hpp \
429 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.hpp \
430 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.hpp
[dd8990]431SELECTIONMOLECULEACTIONDEFS = \
[48d3c0]432 Actions/SelectionAction/Molecules/AllMoleculesAction.def \
433 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.def \
[ebc499]434 Actions/SelectionAction/Molecules/InvertMoleculesAction.def \
[48d3c0]435 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.def \
436 Actions/SelectionAction/Molecules/MoleculeByIdAction.def \
437 Actions/SelectionAction/Molecules/MoleculeByNameAction.def \
438 Actions/SelectionAction/Molecules/MoleculeByOrderAction.def \
439 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.def \
440 Actions/SelectionAction/Molecules/NotAllMoleculesAction.def \
441 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.def \
442 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.def \
443 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.def \
444 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.def \
445 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.def
[70bce9]446
447SELECTIONSHAPEACTIONSOURCE = \
[663606]448 Actions/SelectionAction/Shapes/AllShapesAction.cpp \
[a27dcb]449 Actions/SelectionAction/Shapes/ShapeByNameAction.cpp \
[2c004d]450 Actions/SelectionAction/Shapes/NotAllShapesAction.cpp \
451 Actions/SelectionAction/Shapes/NotShapeByNameAction.cpp
[70bce9]452SELECTIONSHAPEACTIONHEADER = \
[663606]453 Actions/SelectionAction/Shapes/AllShapesAction.hpp \
[a27dcb]454 Actions/SelectionAction/Shapes/ShapeByNameAction.hpp \
[2c004d]455 Actions/SelectionAction/Shapes/NotAllShapesAction.hpp \
456 Actions/SelectionAction/Shapes/NotShapeByNameAction.hpp
[70bce9]457SELECTIONSHAPEACTIONDEFS = \
[663606]458 Actions/SelectionAction/Shapes/AllShapesAction.def \
[a27dcb]459 Actions/SelectionAction/Shapes/ShapeByNameAction.def \
[2c004d]460 Actions/SelectionAction/Shapes/NotAllShapesAction.def \
461 Actions/SelectionAction/Shapes/NotShapeByNameAction.def
[125002]462
[4dc309]463SHAPEACTIONSOURCE = \
[d475a6]464 Actions/ShapeAction/CombineShapesAction.cpp \
[f20da5]465 Actions/ShapeAction/CreateShapeAction.cpp \
[0b5057]466 Actions/ShapeAction/RemoveShapeAction.cpp \
[a2bbb1]467 Actions/ShapeAction/RotateShapeAction.cpp \
[29ea65]468 Actions/ShapeAction/StretchShapeAction.cpp \
[0b5057]469 Actions/ShapeAction/TranslateShapeAction.cpp
[4dc309]470SHAPEACTIONHEADER = \
[d475a6]471 Actions/ShapeAction/CombineShapesAction.hpp \
[f20da5]472 Actions/ShapeAction/CreateShapeAction.hpp \
[0b5057]473 Actions/ShapeAction/RemoveShapeAction.hpp \
[a2bbb1]474 Actions/ShapeAction/RotateShapeAction.hpp \
[29ea65]475 Actions/ShapeAction/StretchShapeAction.hpp \
[0b5057]476 Actions/ShapeAction/TranslateShapeAction.hpp
[4dc309]477SHAPEACTIONDEFS = \
[d475a6]478 Actions/ShapeAction/CombineShapesAction.def \
[f20da5]479 Actions/ShapeAction/CreateShapeAction.def \
[0b5057]480 Actions/ShapeAction/RemoveShapeAction.def \
[a2bbb1]481 Actions/ShapeAction/RotateShapeAction.def \
[29ea65]482 Actions/ShapeAction/StretchShapeAction.def \
[0b5057]483 Actions/ShapeAction/TranslateShapeAction.def
[4dc309]484
[5079a0]485TESSELATIONACTIONSOURCE = \
[455573]486 Actions/TesselationAction/ConvexEnvelopeAction.cpp \
[4dc309]487 Actions/TesselationAction/NonConvexEnvelopeAction.cpp
[5079a0]488TESSELATIONACTIONHEADER = \
[455573]489 Actions/TesselationAction/ConvexEnvelopeAction.hpp \
490 Actions/TesselationAction/NonConvexEnvelopeAction.hpp
[dd8990]491TESSELATIONACTIONDEFS = \
492 Actions/TesselationAction/ConvexEnvelopeAction.def \
493 Actions/TesselationAction/NonConvexEnvelopeAction.def
[455573]494
495UNDOACTIONSOURCE = \
496 Actions/RedoAction.cpp \
497 Actions/UndoAction.cpp
498UNDOACTIONHEADER = \
499 Actions/RedoAction.hpp \
500 Actions/UndoAction.hpp
[dd8990]501UNDOACTIONDEFS = \
502 Actions/RedoAction.def \
503 Actions/UndoAction.def
[455573]504
[5079a0]505
506WORLDACTIONSOURCE = \
[455573]507 Actions/WorldAction/AddEmptyBoundaryAction.cpp \
508 Actions/WorldAction/BoundInBoxAction.cpp \
509 Actions/WorldAction/CenterInBoxAction.cpp \
510 Actions/WorldAction/CenterOnEdgeAction.cpp \
511 Actions/WorldAction/ChangeBoxAction.cpp \
512 Actions/WorldAction/InputAction.cpp \
[5bcbc7]513 Actions/WorldAction/OutputAction.cpp \
[072f0e]514 Actions/WorldAction/OutputAsAction.cpp \
[455573]515 Actions/WorldAction/RepeatBoxAction.cpp \
516 Actions/WorldAction/ScaleBoxAction.cpp \
[c52e08]517 Actions/WorldAction/SetBoundaryConditionsAction.cpp \
[455573]518 Actions/WorldAction/SetDefaultNameAction.cpp \
519 Actions/WorldAction/SetWorldTimeAction.cpp
[5079a0]520WORLDACTIONHEADER = \
[455573]521 Actions/WorldAction/AddEmptyBoundaryAction.hpp \
522 Actions/WorldAction/BoundInBoxAction.hpp \
523 Actions/WorldAction/CenterInBoxAction.hpp \
524 Actions/WorldAction/CenterOnEdgeAction.hpp \
525 Actions/WorldAction/ChangeBoxAction.hpp \
526 Actions/WorldAction/InputAction.hpp \
[5bcbc7]527 Actions/WorldAction/OutputAction.hpp \
[072f0e]528 Actions/WorldAction/OutputAsAction.hpp \
[455573]529 Actions/WorldAction/RepeatBoxAction.hpp \
530 Actions/WorldAction/ScaleBoxAction.hpp \
[c52e08]531 Actions/WorldAction/SetBoundaryConditionsAction.hpp \
[455573]532 Actions/WorldAction/SetDefaultNameAction.hpp \
533 Actions/WorldAction/SetWorldTimeAction.hpp
[dd8990]534WORLDACTIONDEFS = \
535 Actions/WorldAction/AddEmptyBoundaryAction.def \
536 Actions/WorldAction/BoundInBoxAction.def \
537 Actions/WorldAction/CenterInBoxAction.def \
538 Actions/WorldAction/CenterOnEdgeAction.def \
539 Actions/WorldAction/ChangeBoxAction.def \
540 Actions/WorldAction/InputAction.def \
[5bcbc7]541 Actions/WorldAction/OutputAction.def \
[072f0e]542 Actions/WorldAction/OutputAsAction.def \
[dd8990]543 Actions/WorldAction/RepeatBoxAction.def \
544 Actions/WorldAction/ScaleBoxAction.def \
[c52e08]545 Actions/WorldAction/SetBoundaryConditionsAction.def \
[dd8990]546 Actions/WorldAction/SetDefaultNameAction.def \
547 Actions/WorldAction/SetWorldTimeAction.def
[5079a0]548
[c20b35]549#ACTIONPYTHONSOURCE_WITHDIR = $(ACTIONPROTOTYPESSOURCE:Action.cpp=Action.python.cpp)
550#ACTIONPYTHONSOURCE = $(notdir $(ACTIONPYTHONSOURCE_WITHDIR))
[861874]551
[455573]552noinst_LTLIBRARIES += \
553 libMolecuilderActions.la \
554 libMolecuilderActionPrototypes.la
[c20b35]555# libMolecuilderActionPython.la
[004d5c]556libMolecuilderActionPrototypes_la_CPPFLAGS = $(AM_CPPFLAGS)
557if CONDJOBMARKET
558libMolecuilderActionPrototypes_la_CPPFLAGS += $(JobMarket_CFLAGS)
559endif
[48d20d]560if CONDLEVMAR
561libMolecuilderActionPrototypes_la_CPPFLAGS += $(LEVMAR_CPPFLAGS)
562endif
[214240]563libMolecuilderActions_la_includedir = $(includedir)/MoleCuilder/
564libMolecuilderActionPrototypes_la_includedir = $(includedir)/MoleCuilder/
565#libMolecuilderActionPython_la_includedir = $(includedir)/MoleCuilder/
[455573]566
[c015b3]567BUILT_SOURCES += AllActionHeaders.hpp
568if CONDPYTHON
569BUILT_SOURCES += AllActionPython.hpp
570endif
[c20b35]571#$(ACTIONPYTHONSOURCE)
[83e90c]572
[455573]573# UIElements/libMolecuilderUI.la
[e5bf2b]574nobase_libMolecuilderActions_la_include_HEADERS = ${ACTIONSHEADER}
[5e7ebe]575nobase_libMolecuilderActionPrototypes_la_include_HEADERS = ${ACTIONPROTOTYPESHEADER} ${ACTIONPROTOTYPESDEFS}
[83e90c]576nodist_libMolecuilderActionPrototypes_la_include_HEADERS = AllActionHeaders.hpp
[c20b35]577#nobase_libMolecuilderActionPython_la_include_HEADERS = ${ACTIONPROTOTYPESHEADER} ${ACTIONPROTOTYPESDEFS}
578#nodist_libMolecuilderActionPython_la_include_HEADERS = AllActionHeaders.hpp
[861874]579
580## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
581## target. Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
582## will therefore be treated as if it were literally part of the target name,
583## and the variable name derived from that.
584## The file extension .cc is recognized by Automake, and makes it produce
585## rules which invoke the C++ compiler to produce a libtool object file (.lo)
586## from each source file. Note that it is not necessary to list header files
587## which are already listed elsewhere in a _HEADERS variable assignment.
[acbe1b]588libMolecuilderActions_la_SOURCES = ${ACTIONSSOURCE}
[455573]589libMolecuilderActionPrototypes_la_SOURCES = ${ACTIONPROTOTYPESSOURCE}
[c20b35]590#libMolecuilderActionPython_la_SOURCES = ${ACTIONPYTHONSOURCE}
[861874]591
592## Instruct libtool to include ABI version information in the generated shared
593## library file (.so). The library ABI version is defined in configure.ac, so
594## that all version information is kept in one place.
[455573]595#libMolecuilderActions_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
[861874]596
597## The generated configuration header is installed in its own subdirectory of
598## $(libdir). The reason for this is that the configuration information put
599## into this header file describes the target platform the installed library
600## has been built for. Thus the file must not be installed into a location
601## intended for architecture-independent files, as defined by the Filesystem
602## Hierarchy Standard (FHS).
603## The nodist_ prefix instructs Automake to not generate rules for including
604## the listed files in the distribution on 'make dist'. Files that are listed
605## in _HEADERS variables are normally included in the distribution, but the
606## configuration header file is generated at configure time and should not be
607## shipped with the source tarball.
[acbe1b]608#libMolecuilderActions_libincludedir = $(libdir)/MoleCuilder/include
609#nodist_libMolecuilderActions_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
[861874]610
611## Install the generated pkg-config file (.pc) into the expected location for
612## architecture-dependent package configuration information. Occasionally,
613## pkg-config files are also used for architecture-independent data packages,
614## in which case the correct install location would be $(datadir)/pkgconfig.
[acbe1b]615#pkgconfigdir = $(libdir)/pkgconfig
616#pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
[83e90c]617
[c20b35]618#SUFFIXES = .pytho n.cpp
619#.python.cpp: $*.def
620# echo "#include \"$<\"" >$@; \
621# echo "#include \"Actions/Action_impl_python.hpp\"" >>$@; \
622# echo "#include \"Actions/Action_impl_undef.hpp\"" >>$@;
623
[c52e08]624AllActionHeaders.hpp: $(ACTIONPROTOTYPESHEADER) Actions/GlobalListOfActions.hpp
[83e90c]625 echo "#ifndef ALLACTIONHEADERS_HPP_" >$@; \
626 echo "#define ALLACTIONHEADERS_HPP_" >>$@; \
627 for file in $(ACTIONPROTOTYPESHEADER); do \
628 echo "#include \"$$file\"" >>$@; \
629 done; \
630 echo "#endif /* ALLACTIONHEADERS_HPP_ */" >>$@;
631
[c015b3]632MOSTLYCLEANFILES += \
633 AllActionHeaders.hpp
634
635if CONDPYTHON
[c52e08]636AllActionPython.hpp: $(ACTIONPROTOTYPESHEADER) Actions/GlobalListOfActions.hpp
[949953]637 echo "#ifndef ALLACTIONPYTHON_HPP_" >$@; \
638 echo "#define ALLACTIONPYTHON_HPP_" >>$@; \
639 for file in $(ACTIONPROTOTYPESHEADER); do \
640 echo "#include \"`echo $$file | sed -e 's/hpp/def/'`\"" >>$@; \
641 echo "#include \"Actions/Action_impl_python.hpp\"" >>$@; \
642 echo "#include \"Actions/Action_impl_undef.hpp\"" >>$@; \
643 done; \
644 echo "#endif /* ALLACTIONPYTHON_HPP_ */" >>$@;
645
[83e90c]646MOSTLYCLEANFILES += \
[949953]647 AllActionPython.hpp
[c015b3]648
649endif
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