source: src/Actions/BondAction/BondRemoveAction.cpp@ d93d2c

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Last change on this file since d93d2c was 88afc9, checked in by Frederik Heber <heber@…>, 10 years ago

Enhanced add-bonds and remove-bonds to multiply selected pairs of atoms.

  • renamed add/remove-bond -> add/remove-bond(s) to emphasize this.
  • added regression test on three selected atoms.
  • modified userguide entry for both actions.
  • Property mode set to 100644
File size: 5.3 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * BondRemoveAction.cpp
25 *
26 * Created on: Nov 14, 2012
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35#include "CodePatterns/MemDebug.hpp"
36
37#include "Atom/atom.hpp"
38#include "Bond/bond.hpp"
39#include "CodePatterns/Assert.hpp"
40#include "CodePatterns/Log.hpp"
41#include "CodePatterns/Verbose.hpp"
42#include "Descriptors/AtomIdDescriptor.hpp"
43#include "World.hpp"
44#include "WorldTime.hpp"
45
46#include <iostream>
47#include <string>
48
49#include "Actions/BondAction/BondRemoveAction.hpp"
50
51using namespace MoleCuilder;
52
53// and construct the stuff
54#include "BondRemoveAction.def"
55#include "Action_impl_pre.hpp"
56/** =========== define the function ====================== */
57ActionState::ptr BondRemoveAction::performCall() {
58 // check preconditions
59 World& world = World::getInstance();
60 if (world.countSelectedAtoms() <= 1) {
61 STATUS("At least two atoms must be selected for BondAction Remove.");
62 return Action::failure;
63 }
64
65 bondPairIds_t bondPairIds;
66 for (World::AtomSelectionConstIterator firstiter = world.beginAtomSelection();
67 firstiter != world.endAtomSelection(); ++firstiter) {
68 for (World::AtomSelectionConstIterator seconditer = firstiter;
69 seconditer != world.endAtomSelection(); ++seconditer) {
70 if (firstiter == seconditer)
71 continue;
72 if ((firstiter->second)->IsBondedTo(WorldTime::getTime(), seconditer->second))
73 bondPairIds.push_back(
74 std::make_pair((firstiter->second)->getId(), (seconditer->second)->getId()));
75 }
76 }
77 if (bondPairIds.empty()) {
78 STATUS("No bonds are present.");
79 return Action::failure;
80 }
81
82 // create undo
83 BondRemoveState *UndoState = new BondRemoveState(bondPairIds, params);
84
85 // execute action
86 for (bondPairIds_t::const_iterator iter = bondPairIds.begin();
87 iter != bondPairIds.end(); ++iter) {
88 atom *firstatom = world.getAtom(AtomById(iter->first));
89 atom *secondatom = world.getAtom(AtomById(iter->second));
90 ASSERT((firstatom != NULL) && (secondatom != NULL),
91 "BondAddAction::performCall() - at least one of the ids "
92 +toString(iter->first)+" or "+toString(iter->second)+" is not present.");
93 firstatom->removeBond(WorldTime::getTime(), secondatom);
94 ASSERT( !firstatom->IsBondedTo(WorldTime::getTime(), secondatom),
95 "BondAddAction::performCall() - adding bond in between "
96 +toString(*firstatom)+" and "+toString(*secondatom)+" failed.");
97 }
98
99 return ActionState::ptr(UndoState);
100}
101
102ActionState::ptr BondRemoveAction::performUndo(ActionState::ptr _state) {
103 BondRemoveState *state = assert_cast<BondRemoveState*>(_state.get());
104
105 World& world = World::getInstance();
106 for (bondPairIds_t::const_iterator iter = state->bondPairIds.begin();
107 iter != state->bondPairIds.end(); ++iter) {
108 atom * const firstatom = world.getAtom(AtomById(iter->first));
109 atom * const secondatom = world.getAtom(AtomById(iter->second));
110 ASSERT((firstatom != NULL) && (secondatom != NULL),
111 "BondAddAction::performCall() - at least one of the ids "
112 +toString(iter->first)+" or "+toString(iter->second)+" is not present.");
113 if (!firstatom->IsBondedTo(WorldTime::getTime(), secondatom)) {
114 firstatom->addBond(WorldTime::getTime(), secondatom);
115 } else {
116 ELOG(2, "There is already a bond in between "+toString(iter->first)
117 +" and "+toString(iter->second)+".");
118 }
119 }
120
121 return ActionState::ptr(_state);
122}
123
124ActionState::ptr BondRemoveAction::performRedo(ActionState::ptr _state){
125 BondRemoveState *state = assert_cast<BondRemoveState*>(_state.get());
126
127 World& world = World::getInstance();
128 for (bondPairIds_t::const_iterator iter = state->bondPairIds.begin();
129 iter != state->bondPairIds.end(); ++iter) {
130 atom *firstatom = world.getAtom(AtomById(iter->first));
131 atom *secondatom = world.getAtom(AtomById(iter->second));
132 ASSERT((firstatom != NULL) && (secondatom != NULL),
133 "BondAddAction::performCall() - at least one of the ids "
134 +toString(iter->first)+" or "+toString(iter->second)+" is not present.");
135 if (firstatom->IsBondedTo(WorldTime::getTime(), secondatom)) {
136 firstatom->removeBond(WorldTime::getTime(), secondatom);
137 } else {
138 ELOG(2, "There is no bond in between "+toString(iter->first)
139 +" and "+toString(iter->second)+".");
140 }
141 }
142
143 return ActionState::ptr(_state);
144}
145
146bool BondRemoveAction::canUndo() {
147 return true;
148}
149
150bool BondRemoveAction::shouldUndo() {
151 return true;
152}
153/** =========== end of function ====================== */
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