source: src/Actions/AtomAction/ChangeElementAction.cpp@ ce7fdc

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since ce7fdc was ce7fdc, checked in by Frederik Heber <heber@…>, 13 years ago

HUGE: All Action-related codes resides now in namespace MoleCuilder.

  • removed all namespace std in Actions..., replaced by MoleCuilder.
  • Property mode set to 100644
File size: 3.4 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2010 University of Bonn. All rights reserved.
5 * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
6 */
7
8/*
9 * ChangeElementAction.cpp
10 *
11 * Created on: May 9, 2010
12 * Author: heber
13 */
14
15// include config.h
16#ifdef HAVE_CONFIG_H
17#include <config.h>
18#endif
19
20#include "CodePatterns/MemDebug.hpp"
21
22#include "Descriptors/AtomIdDescriptor.hpp"
23#include "atom.hpp"
24#include "element.hpp"
25#include "CodePatterns/Log.hpp"
26#include "LinearAlgebra/Vector.hpp"
27#include "CodePatterns/Verbose.hpp"
28#include "molecule.hpp"
29#include "World.hpp"
30
31#include <iostream>
32#include <map>
33#include <string>
34
35#include "Actions/AtomAction/ChangeElementAction.hpp"
36
37using namespace MoleCuilder;
38
39// and construct the stuff
40#include "ChangeElementAction.def"
41#include "Action_impl_pre.hpp"
42/** =========== define the function ====================== */
43Action::state_ptr AtomChangeElementAction::performCall() {
44 atom *first = NULL;
45 molecule *mol = NULL;
46
47 // obtain information
48 getParametersfromValueStorage();
49
50 // create undo state
51 ElementMap Elements;
52 for (World::AtomSelectionIterator iter = World::getInstance().beginAtomSelection(); iter != World::getInstance().endAtomSelection(); ++iter) {
53 Elements.insert(std::pair<int, const element *> (iter->second->getId(), iter->second->getType()));
54 }
55 AtomChangeElementState *UndoState = new AtomChangeElementState(Elements, params);
56
57 for (World::AtomSelectionIterator iter = World::getInstance().beginAtomSelection(); iter != World::getInstance().endAtomSelection(); ++iter) {
58 first = iter->second;
59 DoLog(1) && (Log() << Verbose(1) << "Changing atom " << *first << " to element " << *params.elemental << "." << endl);
60 mol = first->getMolecule();
61 first->removeFromMolecule(); // remove atom
62 first->setType(params.elemental);
63 mol->AddAtom(first); // add atom to ensure correctness of formula
64 }
65 return Action::state_ptr(UndoState);
66}
67
68Action::state_ptr AtomChangeElementAction::performUndo(Action::state_ptr _state) {
69 AtomChangeElementState *state = assert_cast<AtomChangeElementState*>(_state.get());
70 atom *first = NULL;
71 molecule *mol = NULL;
72
73 for(ElementMap::const_iterator iter = state->Elements.begin(); iter != state->Elements.end(); ++iter) {
74 first = World::getInstance().getAtom(AtomById(iter->first));
75 mol = first->getMolecule();
76 first->removeFromMolecule(); // remove atom
77 first->setType(iter->second);
78 mol->AddAtom(first); // add atom to ensure correctness of formula
79 }
80
81 return Action::state_ptr(_state);
82}
83
84Action::state_ptr AtomChangeElementAction::performRedo(Action::state_ptr _state){
85 AtomChangeElementState *state = assert_cast<AtomChangeElementState*>(_state.get());
86 atom *first = NULL;
87 molecule *mol = NULL;
88
89 for(ElementMap::const_iterator iter = state->Elements.begin(); iter != state->Elements.end(); ++iter) {
90 first = World::getInstance().getAtom(AtomById(iter->first));
91 mol = first->getMolecule();
92 first->removeFromMolecule(); // remove atom
93 first->setType(state->params.elemental);
94 mol->AddAtom(first); // add atom to ensure correctness of formula
95 }
96
97 return Action::state_ptr(_state);
98}
99
100bool AtomChangeElementAction::canUndo() {
101 return true;
102}
103
104bool AtomChangeElementAction::shouldUndo() {
105 return true;
106}
107/** =========== end of function ====================== */
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