source: src/Actions/AtomAction/ChangeElementAction.cpp@ 5ffa05

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 5ffa05 was be21fa, checked in by Frederik Heber <heber@…>, 13 years ago

Moved getParametersfromValueStorage() call from each single Action into base class Action::call().

  • Property mode set to 100644
File size: 3.3 KB
RevLine 
[bcf653]1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
[0aa122]4 * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
[bcf653]5 * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
6 */
7
[97ebf8]8/*
9 * ChangeElementAction.cpp
10 *
11 * Created on: May 9, 2010
12 * Author: heber
13 */
14
[bf3817]15// include config.h
16#ifdef HAVE_CONFIG_H
17#include <config.h>
18#endif
19
[ad011c]20#include "CodePatterns/MemDebug.hpp"
[112b09]21
[f8456c]22#include "Descriptors/AtomIdDescriptor.hpp"
[6f0841]23#include "Atom/atom.hpp"
[3bdb6d]24#include "Element/element.hpp"
[ad011c]25#include "CodePatterns/Log.hpp"
[57f243]26#include "LinearAlgebra/Vector.hpp"
[ad011c]27#include "CodePatterns/Verbose.hpp"
[dddbfe]28#include "molecule.hpp"
[97ebf8]29#include "World.hpp"
30
31#include <iostream>
[f8456c]32#include <map>
[97ebf8]33#include <string>
34
[1fd675]35#include "Actions/AtomAction/ChangeElementAction.hpp"
[454065]36
[ce7fdc]37using namespace MoleCuilder;
38
[1fd675]39// and construct the stuff
40#include "ChangeElementAction.def"
41#include "Action_impl_pre.hpp"
42/** =========== define the function ====================== */
[454065]43Action::state_ptr AtomChangeElementAction::performCall() {
[97ebf8]44 atom *first = NULL;
[dddbfe]45 molecule *mol = NULL;
[97ebf8]46
[f8456c]47 // create undo state
48 ElementMap Elements;
49 for (World::AtomSelectionIterator iter = World::getInstance().beginAtomSelection(); iter != World::getInstance().endAtomSelection(); ++iter) {
50 Elements.insert(std::pair<int, const element *> (iter->second->getId(), iter->second->getType()));
51 }
[1fd675]52 AtomChangeElementState *UndoState = new AtomChangeElementState(Elements, params);
[f8456c]53
[454065]54 for (World::AtomSelectionIterator iter = World::getInstance().beginAtomSelection(); iter != World::getInstance().endAtomSelection(); ++iter) {
55 first = iter->second;
[47d041]56 LOG(1, "Changing atom " << *first << " to element " << *params.elemental << ".");
[dddbfe]57 mol = first->getMolecule();
58 first->removeFromMolecule(); // remove atom
[1fd675]59 first->setType(params.elemental);
[dddbfe]60 mol->AddAtom(first); // add atom to ensure correctness of formula
[454065]61 }
[f8456c]62 return Action::state_ptr(UndoState);
[97ebf8]63}
64
65Action::state_ptr AtomChangeElementAction::performUndo(Action::state_ptr _state) {
[f8456c]66 AtomChangeElementState *state = assert_cast<AtomChangeElementState*>(_state.get());
67 atom *first = NULL;
68 molecule *mol = NULL;
[97ebf8]69
[f8456c]70 for(ElementMap::const_iterator iter = state->Elements.begin(); iter != state->Elements.end(); ++iter) {
71 first = World::getInstance().getAtom(AtomById(iter->first));
72 mol = first->getMolecule();
73 first->removeFromMolecule(); // remove atom
74 first->setType(iter->second);
75 mol->AddAtom(first); // add atom to ensure correctness of formula
76 }
77
78 return Action::state_ptr(_state);
[97ebf8]79}
80
81Action::state_ptr AtomChangeElementAction::performRedo(Action::state_ptr _state){
[f8456c]82 AtomChangeElementState *state = assert_cast<AtomChangeElementState*>(_state.get());
83 atom *first = NULL;
84 molecule *mol = NULL;
85
86 for(ElementMap::const_iterator iter = state->Elements.begin(); iter != state->Elements.end(); ++iter) {
87 first = World::getInstance().getAtom(AtomById(iter->first));
88 mol = first->getMolecule();
89 first->removeFromMolecule(); // remove atom
[1fd675]90 first->setType(state->params.elemental);
[f8456c]91 mol->AddAtom(first); // add atom to ensure correctness of formula
92 }
93
94 return Action::state_ptr(_state);
[97ebf8]95}
96
97bool AtomChangeElementAction::canUndo() {
[f8456c]98 return true;
[97ebf8]99}
100
101bool AtomChangeElementAction::shouldUndo() {
[f8456c]102 return true;
[97ebf8]103}
[1fd675]104/** =========== end of function ====================== */
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