| [bcf653] | 1 | /* | 
|---|
|  | 2 | * Project: MoleCuilder | 
|---|
|  | 3 | * Description: creates and alters molecular systems | 
|---|
| [0aa122] | 4 | * Copyright (C)  2010-2012 University of Bonn. All rights reserved. | 
|---|
| [94d5ac6] | 5 | * | 
|---|
|  | 6 | * | 
|---|
|  | 7 | *   This file is part of MoleCuilder. | 
|---|
|  | 8 | * | 
|---|
|  | 9 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
|---|
|  | 10 | *    it under the terms of the GNU General Public License as published by | 
|---|
|  | 11 | *    the Free Software Foundation, either version 2 of the License, or | 
|---|
|  | 12 | *    (at your option) any later version. | 
|---|
|  | 13 | * | 
|---|
|  | 14 | *    MoleCuilder is distributed in the hope that it will be useful, | 
|---|
|  | 15 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
|---|
|  | 16 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
|---|
|  | 17 | *    GNU General Public License for more details. | 
|---|
|  | 18 | * | 
|---|
|  | 19 | *    You should have received a copy of the GNU General Public License | 
|---|
|  | 20 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
|---|
| [bcf653] | 21 | */ | 
|---|
|  | 22 |  | 
|---|
| [97ebf8] | 23 | /* | 
|---|
|  | 24 | * PrincipalAxisSystemAction.cpp | 
|---|
|  | 25 | * | 
|---|
|  | 26 | *  Created on: May 12, 2010 | 
|---|
|  | 27 | *      Author: heber | 
|---|
|  | 28 | */ | 
|---|
|  | 29 |  | 
|---|
| [bf3817] | 30 | // include config.h | 
|---|
|  | 31 | #ifdef HAVE_CONFIG_H | 
|---|
|  | 32 | #include <config.h> | 
|---|
|  | 33 | #endif | 
|---|
|  | 34 |  | 
|---|
| [ad011c] | 35 | #include "CodePatterns/MemDebug.hpp" | 
|---|
| [112b09] | 36 |  | 
|---|
| [ad011c] | 37 | #include "CodePatterns/Log.hpp" | 
|---|
|  | 38 | #include "CodePatterns/Verbose.hpp" | 
|---|
| [cca9ef] | 39 | #include "LinearAlgebra/RealSpaceMatrix.hpp" | 
|---|
| [6e5084] | 40 | #include "LinearAlgebra/Vector.hpp" | 
|---|
| [3bdb6d] | 41 | #include "Element/element.hpp" | 
|---|
| [6e5084] | 42 | #include "molecule.hpp" | 
|---|
| [97ebf8] | 43 |  | 
|---|
|  | 44 | #include <iostream> | 
|---|
|  | 45 | #include <string> | 
|---|
|  | 46 |  | 
|---|
| [9ee38b] | 47 | #include "Actions/AnalysisAction/PrincipalAxisSystemAction.hpp" | 
|---|
| [ca1ba5] | 48 |  | 
|---|
| [ce7fdc] | 49 | using namespace MoleCuilder; | 
|---|
|  | 50 |  | 
|---|
| [9ee38b] | 51 | // and construct the stuff | 
|---|
|  | 52 | #include "PrincipalAxisSystemAction.def" | 
|---|
|  | 53 | #include "Action_impl_pre.hpp" | 
|---|
| [ca1ba5] | 54 |  | 
|---|
| [9ee38b] | 55 | /** =========== define the function ====================== */ | 
|---|
| [b5b01e] | 56 | ActionState::ptr AnalysisPrincipalAxisSystemAction::performCall() { | 
|---|
| [47d041] | 57 | LOG(0, "Evaluating prinicipal axis."); | 
|---|
| [b76394] | 58 | for (World::MoleculeSelectionIterator iter = World::getInstance().beginMoleculeSelection(); iter != World::getInstance().endMoleculeSelection(); ++iter) { | 
|---|
|  | 59 | molecule *mol = iter->second; | 
|---|
| [4782599] | 60 |  | 
|---|
| [1f91f4] | 61 | // get inertia tensor | 
|---|
|  | 62 | RealSpaceMatrix InertiaTensor = mol->getInertiaTensor(); | 
|---|
|  | 63 |  | 
|---|
|  | 64 | // diagonalize matrix | 
|---|
| [4782599] | 65 | Vector EigenValues = InertiaTensor.transformToEigenbasis(); | 
|---|
|  | 66 |  | 
|---|
|  | 67 | // print principal axis system | 
|---|
| [47d041] | 68 | LOG(1, "INFO: The Principal Axis System of molecule " | 
|---|
| [4782599] | 69 | << mol->getName() <<  " is:" | 
|---|
|  | 70 | << InertiaTensor << endl | 
|---|
|  | 71 | << " with eigenvalues " | 
|---|
| [47d041] | 72 | << EigenValues); | 
|---|
| [b76394] | 73 | } | 
|---|
| [ca1ba5] | 74 | return Action::success; | 
|---|
| [97ebf8] | 75 | } | 
|---|
|  | 76 |  | 
|---|
| [b5b01e] | 77 | ActionState::ptr AnalysisPrincipalAxisSystemAction::performUndo(ActionState::ptr _state) { | 
|---|
| [ca1ba5] | 78 | return Action::success; | 
|---|
| [97ebf8] | 79 | } | 
|---|
|  | 80 |  | 
|---|
| [b5b01e] | 81 | ActionState::ptr AnalysisPrincipalAxisSystemAction::performRedo(ActionState::ptr _state){ | 
|---|
| [ca1ba5] | 82 | return Action::success; | 
|---|
| [97ebf8] | 83 | } | 
|---|
|  | 84 |  | 
|---|
|  | 85 | bool AnalysisPrincipalAxisSystemAction::canUndo() { | 
|---|
| [ca1ba5] | 86 | return true; | 
|---|
| [97ebf8] | 87 | } | 
|---|
|  | 88 |  | 
|---|
|  | 89 | bool AnalysisPrincipalAxisSystemAction::shouldUndo() { | 
|---|
| [ca1ba5] | 90 | return true; | 
|---|
| [97ebf8] | 91 | } | 
|---|
| [9ee38b] | 92 | /** =========== end of function ====================== */ | 
|---|