Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | 
            Last change
 on this file since cbfb9a was             ce7fdc, checked in by Frederik Heber <heber@…>, 14 years ago           | 
        
        
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HUGE: All Action-related codes resides now in namespace MoleCuilder. 
 
- removed all namespace std in Actions..., replaced by MoleCuilder.
  
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Property                 mode
 set to                 
100644
               
             
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          | 
            File size:
            2.1 KB
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| [bcf653] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2010 University of Bonn. All rights reserved.
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 | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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 | 6 |  */
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 | 7 | 
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| [97ebf8] | 8 | /*
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 | 9 |  * PrincipalAxisSystemAction.cpp
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 | 10 |  *
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 | 11 |  *  Created on: May 12, 2010
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 | 12 |  *      Author: heber
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 | 13 |  */
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 | 14 | 
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| [bf3817] | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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| [112b09] | 21 | 
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| [ad011c] | 22 | #include "CodePatterns/Log.hpp"
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 | 23 | #include "CodePatterns/Verbose.hpp"
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| [cca9ef] | 24 | #include "LinearAlgebra/RealSpaceMatrix.hpp"
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| [6e5084] | 25 | #include "LinearAlgebra/Vector.hpp"
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 | 26 | #include "element.hpp"
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 | 27 | #include "molecule.hpp"
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| [97ebf8] | 28 | 
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 | 29 | #include <iostream>
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 | 30 | #include <string>
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 | 31 | 
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| [9ee38b] | 32 | #include "Actions/AnalysisAction/PrincipalAxisSystemAction.hpp"
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| [ca1ba5] | 33 | 
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| [ce7fdc] | 34 | using namespace MoleCuilder;
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 | 35 | 
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| [9ee38b] | 36 | // and construct the stuff
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 | 37 | #include "PrincipalAxisSystemAction.def"
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 | 38 | #include "Action_impl_pre.hpp"
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| [ca1ba5] | 39 | 
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| [9ee38b] | 40 | /** =========== define the function ====================== */
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| [ca1ba5] | 41 | Action::state_ptr AnalysisPrincipalAxisSystemAction::performCall() {
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 | 42 |   DoLog(0) && (Log() << Verbose(0) << "Evaluating prinicipal axis." << endl);
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| [b76394] | 43 |   for (World::MoleculeSelectionIterator iter = World::getInstance().beginMoleculeSelection(); iter != World::getInstance().endMoleculeSelection(); ++iter) {
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 | 44 |     molecule *mol = iter->second;
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| [4782599] | 45 | 
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| [1f91f4] | 46 |     // get inertia tensor
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 | 47 |     RealSpaceMatrix InertiaTensor = mol->getInertiaTensor();
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 | 48 | 
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 | 49 |                 // diagonalize matrix
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| [4782599] | 50 |     Vector EigenValues = InertiaTensor.transformToEigenbasis();
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 | 51 | 
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 | 52 |     // print principal axis system
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 | 53 |     DoLog(0) && (Log() << Verbose(0) << "The Principal Axis System of molecule "
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 | 54 |         << mol->getName() <<  " is:"
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 | 55 |         << InertiaTensor << endl
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 | 56 |         << " with eigenvalues "
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 | 57 |         << EigenValues << endl);
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| [b76394] | 58 |   }
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| [ca1ba5] | 59 |   return Action::success;
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| [97ebf8] | 60 | }
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 | 61 | 
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 | 62 | Action::state_ptr AnalysisPrincipalAxisSystemAction::performUndo(Action::state_ptr _state) {
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| [ca1ba5] | 63 |   return Action::success;
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| [97ebf8] | 64 | }
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 | 65 | 
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 | 66 | Action::state_ptr AnalysisPrincipalAxisSystemAction::performRedo(Action::state_ptr _state){
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| [ca1ba5] | 67 |   return Action::success;
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| [97ebf8] | 68 | }
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 | 69 | 
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 | 70 | bool AnalysisPrincipalAxisSystemAction::canUndo() {
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| [ca1ba5] | 71 |   return true;
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| [97ebf8] | 72 | }
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 | 73 | 
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 | 74 | bool AnalysisPrincipalAxisSystemAction::shouldUndo() {
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| [ca1ba5] | 75 |   return true;
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| [97ebf8] | 76 | }
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| [9ee38b] | 77 | /** =========== end of function ====================== */
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