| [bcf653] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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|  | 4 | * Copyright (C)  2010 University of Bonn. All rights reserved. | 
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|  | 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details. | 
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|  | 6 | */ | 
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|  | 7 |  | 
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| [97ebf8] | 8 | /* | 
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|  | 9 | * PairCorrelationAction.cpp | 
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|  | 10 | * | 
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|  | 11 | *  Created on: May 9, 2010 | 
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|  | 12 | *      Author: heber | 
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|  | 13 | */ | 
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|  | 14 |  | 
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| [bf3817] | 15 | // include config.h | 
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|  | 16 | #ifdef HAVE_CONFIG_H | 
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|  | 17 | #include <config.h> | 
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|  | 18 | #endif | 
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|  | 19 |  | 
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| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp" | 
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| [112b09] | 21 |  | 
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| [97ebf8] | 22 | #include "analysis_correlation.hpp" | 
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| [104524] | 23 | #include "boundary.hpp" | 
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|  | 24 | #include "linkedcell.hpp" | 
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| [ad011c] | 25 | #include "CodePatterns/Verbose.hpp" | 
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|  | 26 | #include "CodePatterns/Log.hpp" | 
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| [97ebf8] | 27 | #include "element.hpp" | 
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| [104524] | 28 | #include "molecule.hpp" | 
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| [97ebf8] | 29 | #include "periodentafel.hpp" | 
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| [57f243] | 30 | #include "LinearAlgebra/Vector.hpp" | 
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| [97ebf8] | 31 | #include "World.hpp" | 
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|  | 32 |  | 
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|  | 33 | #include <iostream> | 
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|  | 34 | #include <string> | 
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|  | 35 |  | 
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|  | 36 | using namespace std; | 
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|  | 37 |  | 
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| [9ee38b] | 38 | #include "Actions/AnalysisAction/PairCorrelationAction.hpp" | 
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| [97ebf8] | 39 |  | 
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| [9ee38b] | 40 | // and construct the stuff | 
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|  | 41 | #include "PairCorrelationAction.def" | 
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|  | 42 | #include "Action_impl_pre.hpp" | 
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| [97ebf8] | 43 |  | 
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| [9ee38b] | 44 | /** =========== define the function ====================== */ | 
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| [d02e07] | 45 | Action::state_ptr AnalysisPairCorrelationAction::performCall() { | 
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|  | 46 | int ranges[3] = {1, 1, 1}; | 
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|  | 47 | ofstream output; | 
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|  | 48 | ofstream binoutput; | 
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|  | 49 | string type; | 
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|  | 50 | BinPairMap *binmap = NULL; | 
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| [97ebf8] | 51 |  | 
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| [d02e07] | 52 | // obtain information | 
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| [9ee38b] | 53 | getParametersfromValueStorage(); | 
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| [d02e07] | 54 |  | 
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|  | 55 | // execute action | 
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| [e4afb4] | 56 | output.open(params.outputname.string().c_str()); | 
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|  | 57 | binoutput.open(params.binoutputname.string().c_str()); | 
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| [d02e07] | 58 | PairCorrelationMap *correlationmap = NULL; | 
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| [e65de8] | 59 | std::vector<molecule*> molecules = World::getInstance().getSelectedMolecules(); | 
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| [9ee38b] | 60 | if (params.periodic) | 
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|  | 61 | correlationmap = PeriodicPairCorrelation(molecules, params.elements, ranges); | 
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| [d02e07] | 62 | else | 
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| [9ee38b] | 63 | correlationmap = PairCorrelation(molecules, params.elements); | 
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| [92e5cb] | 64 | OutputCorrelationMap<PairCorrelationMap>(&output, correlationmap, OutputPairCorrelation_Header, OutputPairCorrelation_Value); | 
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| [9ee38b] | 65 | binmap = BinData( correlationmap, params.BinWidth, params.BinStart, params.BinEnd ); | 
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| [92e5cb] | 66 | OutputCorrelationMap<BinPairMap> ( &binoutput, binmap, OutputCorrelation_Header, OutputCorrelation_Value ); | 
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| [d02e07] | 67 | delete(binmap); | 
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|  | 68 | delete(correlationmap); | 
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|  | 69 | output.close(); | 
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|  | 70 | binoutput.close(); | 
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|  | 71 | return Action::success; | 
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|  | 72 | } | 
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|  | 73 |  | 
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|  | 74 | Action::state_ptr AnalysisPairCorrelationAction::performUndo(Action::state_ptr _state) { | 
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|  | 75 | return Action::success; | 
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| [97ebf8] | 76 | } | 
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|  | 77 |  | 
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|  | 78 | Action::state_ptr AnalysisPairCorrelationAction::performRedo(Action::state_ptr _state){ | 
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| [d02e07] | 79 | return Action::success; | 
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| [97ebf8] | 80 | } | 
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|  | 81 |  | 
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|  | 82 | bool AnalysisPairCorrelationAction::canUndo() { | 
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| [d02e07] | 83 | return true; | 
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| [97ebf8] | 84 | } | 
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|  | 85 |  | 
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|  | 86 | bool AnalysisPairCorrelationAction::shouldUndo() { | 
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| [d02e07] | 87 | return true; | 
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| [97ebf8] | 88 | } | 
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| [9ee38b] | 89 | /** =========== end of function ====================== */ | 
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