source: src/Actions/AnalysisAction/DipoleAngularCorrelationAction.cpp@ 4b8630

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Last change on this file since 4b8630 was 4b8630, checked in by Frederik Heber <heber@…>, 13 years ago

World::setTime() now updates bond structure of system and related changes to DipoleAngularCorrelation.

  • extended regression test Analysis/DipoleAngularCorrelation with xyz example whose bond structure is updated per time step.
  • FIX: DepthFirstSearchAnalysis::operator() did not reset bonds to unused.
  • FIX: DipoleAngularCorrelationAction has to work on atoms not molecules as the latter are subject to changes due to changing bond structure.
  • FIX: DipoleAngularCorrelation() re-calculates current set of molecules from the select atoms and stores first atom in values file, not molecule name.
  • Property mode set to 100644
File size: 2.6 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2010 University of Bonn. All rights reserved.
5 * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
6 */
7
8/*
9 * DipoleAngularCorrelationAction.cpp
10 *
11 * Created on: Feb 11, 2011
12 * Author: heber
13 */
14
15// include config.h
16#ifdef HAVE_CONFIG_H
17#include <config.h>
18#endif
19
20#include "CodePatterns/MemDebug.hpp"
21
22#include "Analysis/analysis_correlation.hpp"
23#include "Tesselation/boundary.hpp"
24#include "linkedcell.hpp"
25#include "CodePatterns/Log.hpp"
26#include "Element/element.hpp"
27#include "molecule.hpp"
28#include "Element/periodentafel.hpp"
29#include "LinearAlgebra/Vector.hpp"
30#include "World.hpp"
31
32#include <iostream>
33#include <string>
34
35#include "Actions/AnalysisAction/DipoleAngularCorrelationAction.hpp"
36
37using namespace MoleCuilder;
38
39// and construct the stuff
40#include "DipoleAngularCorrelationAction.def"
41#include "Action_impl_pre.hpp"
42
43/** =========== define the function ====================== */
44Action::state_ptr AnalysisDipoleAngularCorrelationAction::performCall() {
45 //int ranges[3] = {1, 1, 1};
46 ofstream output;
47 ofstream binoutput;
48 string type;
49 BinPairMap *binmap = NULL;
50
51 // obtain information
52 getParametersfromValueStorage();
53
54 // execute action
55 output.open(params.outputname.string().c_str());
56 binoutput.open(params.binoutputname.string().c_str());
57 DipoleAngularCorrelationMap *correlationmap = NULL;
58 std::vector<atom*> atoms = World::getInstance().getSelectedAtoms();
59 LOG(0, "STATUS: There are " << atoms.size() << " selected atoms.");
60 ASSERT(!params.periodic, "AnalysisDipoleAngularCorrelationAction() - periodic case not implemented.");
61 correlationmap = DipoleAngularCorrelation(atoms);
62 OutputCorrelationMap<DipoleAngularCorrelationMap>(&output, correlationmap, OutputDipoleAngularCorrelation_Header, OutputDipoleAngularCorrelation_Value);
63 binmap = BinData( correlationmap, params.BinWidth, params.BinStart, params.BinEnd );
64 OutputCorrelationMap<BinPairMap> ( &binoutput, binmap, OutputCorrelation_Header, OutputCorrelation_Value );
65 delete(binmap);
66 delete(correlationmap);
67 output.close();
68 binoutput.close();
69 return Action::success;
70}
71
72Action::state_ptr AnalysisDipoleAngularCorrelationAction::performUndo(Action::state_ptr _state) {
73 return Action::success;
74}
75
76Action::state_ptr AnalysisDipoleAngularCorrelationAction::performRedo(Action::state_ptr _state){
77 return Action::success;
78}
79
80bool AnalysisDipoleAngularCorrelationAction::canUndo() {
81 return true;
82}
83
84bool AnalysisDipoleAngularCorrelationAction::shouldUndo() {
85 return true;
86}
87/** =========== end of function ====================== */
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