| 1 | /*
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| 2 |  * Project: MoleCuilder
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| 3 |  * Description: creates and alters molecular systems
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| 4 |  * Copyright (C)  2013 Frederik Heber. All rights reserved.
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| 5 |  * 
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| 6 |  *
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| 7 |  *   This file is part of MoleCuilder.
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| 8 |  *
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| 9 |  *    MoleCuilder is free software: you can redistribute it and/or modify
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| 10 |  *    it under the terms of the GNU General Public License as published by
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| 11 |  *    the Free Software Foundation, either version 2 of the License, or
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| 12 |  *    (at your option) any later version.
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| 13 |  *
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| 14 |  *    MoleCuilder is distributed in the hope that it will be useful,
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| 15 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 16 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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| 17 |  *    GNU General Public License for more details.
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| 18 |  *
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| 19 |  *    You should have received a copy of the GNU General Public License
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| 20 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
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| 21 |  */
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| 22 | 
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| 23 | /*
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| 24 |  * ActionQueue.cpp
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| 25 |  *
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| 26 |  *  Created on: Aug 16, 2013
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| 27 |  *      Author: heber
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| 28 |  */
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| 29 | 
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| 30 | // include config.h
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| 31 | #ifdef HAVE_CONFIG_H
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| 32 | #include <config.h>
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| 33 | #endif
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| 34 | 
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| 35 | //#include "CodePatterns/MemDebug.hpp"
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| 36 | 
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| 37 | #include "Actions/ActionQueue.hpp"
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| 38 | 
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| 39 | #include "CodePatterns/Assert.hpp"
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| 40 | #include "CodePatterns/IteratorAdaptors.hpp"
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| 41 | #include "CodePatterns/Log.hpp"
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| 42 | #include "CodePatterns/Singleton_impl.hpp"
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| 43 | 
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| 44 | #include <boost/date_time/posix_time/posix_time.hpp>
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| 45 | #include <boost/thread/recursive_mutex.hpp>
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| 46 | #include <boost/version.hpp>
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| 47 | #include <iterator>
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| 48 | #include <string>
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| 49 | #include <sstream>
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| 50 | #include <vector>
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| 51 | 
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| 52 | #include "Actions/ActionExceptions.hpp"
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| 53 | #include "Actions/ActionHistory.hpp"
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| 54 | #include "Actions/ActionRegistry.hpp"
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| 55 | #include "Actions/MakroAction.hpp"
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| 56 | #include "Actions/Process.hpp"
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| 57 | #include "World.hpp"
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| 58 | 
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| 59 | using namespace MoleCuilder;
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| 60 | 
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| 61 | const Action* ActionQueue::_lastchangedaction = NULL;
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| 62 | 
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| 63 | ActionQueue::ActionQueue() :
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| 64 |     Observable("ActionQueue"),
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| 65 |     AR(new ActionRegistry()),
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| 66 |     history(new ActionHistory),
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| 67 |     lastActionOk(true),
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| 68 |     CurrentAction(0),
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| 69 | #ifdef HAVE_ACTION_THREAD
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| 70 |     run_thread(boost::bind(&ActionQueue::run, this)),
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| 71 |     run_thread_isIdle(true),
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| 72 | #endif
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| 73 |     dryrun_flag(false)
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| 74 | {
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| 75 |   // channels of observable
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| 76 |   Channels *OurChannel = new Channels;
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| 77 |   Observable::insertNotificationChannel( std::make_pair(static_cast<Observable *>(this), OurChannel) );
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| 78 |   // add instance for each notification type
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| 79 |   for (size_t type = 0; type < NotificationType_MAX; ++type)
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| 80 |     OurChannel->addChannel(type);
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| 81 | }
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| 82 | 
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| 83 | ActionQueue::~ActionQueue()
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| 84 | {
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| 85 | #ifdef HAVE_ACTION_THREAD
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| 86 |   stop();
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| 87 | 
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| 88 |   clearTempQueue();
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| 89 | #endif
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| 90 | 
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| 91 |   clearQueue();
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| 92 | 
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| 93 |   delete history;
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| 94 |   delete AR;
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| 95 | }
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| 96 | 
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| 97 | void ActionQueue::queueAction(const std::string &name, enum Action::QueryOptions state)
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| 98 | {
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| 99 |   const Action & registryaction = AR->getActionByName(name);
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| 100 |   queueAction(®istryaction, state);
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| 101 | }
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| 102 | 
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| 103 | void ActionQueue::queueAction(const Action * const _action, enum Action::QueryOptions state)
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| 104 | {
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| 105 |   Action *newaction = _action->clone(state);
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| 106 |   newaction->prepare(state);
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| 107 | #ifdef HAVE_ACTION_THREAD
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| 108 |   mtx_queue.lock();
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| 109 | #endif
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| 110 |   actionqueue.push_back( newaction );
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| 111 | #ifndef HAVE_ACTION_THREAD
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| 112 |   try {
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| 113 |     if (!isDryRun(newaction)) {
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| 114 |       CurrentAction = actionqueue.size()-1;
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| 115 |       newaction->call();
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| 116 |       CurrentAction = actionqueue.size();
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| 117 |     }
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| 118 |     lastActionOk = true;
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| 119 |   } catch(ActionFailureException &e) {
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| 120 |     std::cerr << "Action " << *boost::get_error_info<ActionNameString>(e) << " has failed." << std::endl;
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| 121 |     World::getInstance().setExitFlag(5);
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| 122 |     clearQueue(actionqueue.size()-1);
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| 123 |     lastActionOk = false;
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| 124 |     std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| 125 |   } catch (std::exception &e) {
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| 126 |     pushStatus("FAIL: General exception caught, aborting.");
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| 127 |     World::getInstance().setExitFlag(134);
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| 128 |     clearQueue(actionqueue.size()-1);
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| 129 |     lastActionOk = false;
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| 130 |     std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| 131 |   }
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| 132 |   if (lastActionOk) {
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| 133 |     OBSERVE;
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| 134 |     NOTIFY(ActionQueued);
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| 135 |     _lastchangedaction = newaction;
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| 136 |   }
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| 137 | #else
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| 138 |   mtx_queue.unlock();
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| 139 |   setRunThreadIdle(isIdle());
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| 140 | #endif
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| 141 | }
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| 142 | 
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| 143 | void ActionQueue::insertAction(Action *_action, enum Action::QueryOptions state)
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| 144 | {
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| 145 | #ifndef HAVE_ACTION_THREAD
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| 146 |   queueAction(_action, state);
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| 147 | #else
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| 148 |   Action *newaction = _action->clone(state);
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| 149 |   newaction->prepare(state);
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| 150 |   bool tempqueue_notempty;
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| 151 |   {
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| 152 |     boost::recursive_mutex::scoped_lock lock(mtx_queue);
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| 153 |     tempqueue.push_back( newaction );
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| 154 |     tempqueue_notempty = !tempqueue.empty();
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| 155 |   }
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| 156 |   setRunThreadIdle( !((!isIdle()) || tempqueue_notempty) );
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| 157 | #endif
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| 158 | }
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| 159 | 
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| 160 | bool ActionQueue::isIdle() const
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| 161 | {
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| 162 | #ifdef HAVE_ACTION_THREAD
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| 163 |   boost::recursive_mutex::scoped_lock lock(mtx_queue);
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| 164 | #endif
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| 165 |   bool status = (CurrentAction == actionqueue.size());
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| 166 |   return status;
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| 167 | }
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| 168 | 
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| 169 | bool ActionQueue::isProcess() const
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| 170 | {
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| 171 |   if (isIdle())
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| 172 |     return false;
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| 173 |   const Process *possibleprocess = dynamic_cast<const Process *>(&getCurrentAction());
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| 174 |   if (possibleprocess == NULL)
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| 175 |     return false;
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| 176 |   else
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| 177 |     return true;
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| 178 | }
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| 179 | 
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| 180 | bool ActionQueue::isMakroAction() const
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| 181 | {
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| 182 |   if (isIdle())
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| 183 |     return false;
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| 184 |   const MakroAction *possiblemakroaction = dynamic_cast<const MakroAction *>(&getCurrentAction());
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| 185 |   if (possiblemakroaction == NULL)
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| 186 |     return false;
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| 187 |   else
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| 188 |     return true;
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| 189 | }
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| 190 | 
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| 191 | const Action& ActionQueue::getCurrentAction() const
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| 192 | {
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| 193 | #ifdef HAVE_ACTION_THREAD
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| 194 |   boost::recursive_mutex::scoped_lock lock(mtx_queue);
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| 195 | #endif
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| 196 |   return *const_cast<const Action *>(actionqueue[CurrentAction]);
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| 197 | }
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| 198 | 
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| 199 | #ifdef HAVE_ACTION_THREAD
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| 200 | void ActionQueue::run()
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| 201 | {
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| 202 |   bool Interrupted = false;
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| 203 |   do {
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| 204 |     // sleep for some time and wait for queue to fill up again
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| 205 |     try {
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| 206 | #if BOOST_VERSION < 105000
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| 207 |       run_thread.sleep(boost::get_system_time() + boost::posix_time::milliseconds(100));
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| 208 | #else
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| 209 |       boost::this_thread::sleep_for(boost::chrono::milliseconds(100));
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| 210 | #endif
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| 211 |     } catch(boost::thread_interrupted &e) {
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| 212 |       LOG(2, "INFO: ActionQueue has received stop signal.");
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| 213 |       Interrupted = true;
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| 214 |     }
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| 215 | //    LOG(1, "DEBUG: Start of ActionQueue's run() loop.");
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| 216 |     // call all currently present Actions
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| 217 |     insertTempQueue();
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| 218 |     bool status = !isIdle();
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| 219 |     while (status) {
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| 220 |       //      boost::this_thread::disable_interruption di;
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| 221 |       try {
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| 222 |         // pick next action to run
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| 223 |         Action * action_to_run;
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| 224 |         {
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| 225 |           boost::recursive_mutex::scoped_lock lock(mtx_queue);
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| 226 |           action_to_run = actionqueue[CurrentAction];
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| 227 |         }
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| 228 |         LOG(0, "Calling Action " << action_to_run->getName() << " ... ");
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| 229 |         // run action
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| 230 |         if (!isDryRun(action_to_run))
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| 231 |           action_to_run->call();
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| 232 |         pushStatus("SUCCESS: Action "+action_to_run->getName()+" successful.");
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| 233 |         lastActionOk = true;
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| 234 |       } catch(ActionFailureException &e) {
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| 235 |         pushStatus("FAIL: Action "+*boost::get_error_info<ActionNameString>(e)+" has failed.");
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| 236 |         World::getInstance().setExitFlag(5);
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| 237 |         clearQueue(CurrentAction);
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| 238 |         clearTempQueue();
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| 239 |         lastActionOk = false;
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| 240 |         std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| 241 |       } catch (std::exception &e) {
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| 242 |         pushStatus("FAIL: General exception caught, aborting.");
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| 243 |         World::getInstance().setExitFlag(134);
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| 244 |         clearQueue(CurrentAction);
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| 245 |         clearTempQueue();
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| 246 |         lastActionOk = false;
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| 247 |         std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| 248 |       }
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| 249 |       if (lastActionOk) {
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| 250 |         OBSERVE;
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| 251 |         NOTIFY(ActionQueued);
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| 252 |         stepOnToNextAction();
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| 253 |       }
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| 254 |       // insert new actions (before [CurrentAction]) if they have been spawned
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| 255 |       // we must have an extra vector for this, as we cannot change actionqueue
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| 256 |       // while an action instance is "in-use"
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| 257 |       insertTempQueue();
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| 258 |       status = !isIdle();
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| 259 |     }
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| 260 |     bool tempqueue_notempty;
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| 261 |     {
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| 262 |       boost::recursive_mutex::scoped_lock lock(mtx_queue);
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| 263 |       tempqueue_notempty = !tempqueue.empty();
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| 264 |     }
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| 265 |     setRunThreadIdle( !((!isIdle()) || tempqueue_notempty) );
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| 266 |     cond_idle.notify_one();
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| 267 | //    LOG(1, "DEBUG: End of ActionQueue's run() loop.");
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| 268 |   } while (!Interrupted);
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| 269 | }
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| 270 | 
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| 271 | void ActionQueue::stepOnToNextAction()
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| 272 | {
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| 273 |    boost::recursive_mutex::scoped_lock lock(mtx_queue);
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| 274 |    _lastchangedaction = actionqueue[CurrentAction];
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| 275 |    CurrentAction++;
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| 276 | }
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| 277 | 
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| 278 | void ActionQueue::insertTempQueue()
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| 279 | {
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| 280 |   if (!tempqueue.empty()) {
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| 281 |     // access actionqueue, hence using mutex
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| 282 |     boost::recursive_mutex::scoped_lock lock(mtx_queue);
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| 283 |     actionqueue.insert( actionqueue.end(), tempqueue.begin(), tempqueue.end() );
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| 284 |     tempqueue.clear();
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| 285 |   }
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| 286 | }
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| 287 | 
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| 288 | void ActionQueue::wait()
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| 289 | {
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| 290 |   boost::unique_lock<boost::mutex> lock(mtx_idle);
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| 291 |   while(!run_thread_isIdle)
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| 292 |   {
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| 293 |       cond_idle.wait(lock);
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| 294 |   }
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| 295 | }
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| 296 | #endif
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| 297 | 
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| 298 | #ifdef HAVE_ACTION_THREAD
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| 299 | void ActionQueue::stop()
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| 300 | {
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| 301 |   // notify actionqueue thread that we wish to terminate
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| 302 |   run_thread.interrupt();
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| 303 |   // wait till it ends
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| 304 |   run_thread.join();
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| 305 | }
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| 306 | #endif
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| 307 | 
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| 308 | const Action& ActionQueue::getActionByName(const std::string &name)
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| 309 | {
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| 310 |   return AR->getActionByName(name);
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| 311 | }
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| 312 | 
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| 313 | bool ActionQueue::isActionKnownByName(const std::string &name) const
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| 314 | {
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| 315 |   return AR->isActionPresentByName(name);
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| 316 | }
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| 317 | 
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| 318 | void ActionQueue::registerAction(Action *_action)
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| 319 | {
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| 320 |   AR->registerInstance(_action);
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| 321 | }
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| 322 | 
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| 323 | void ActionQueue::outputAsCLI(std::ostream &output) const
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| 324 | {
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| 325 |   for (ActionQueue_t::const_iterator iter = actionqueue.begin();
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| 326 |       iter != actionqueue.end();
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| 327 |       ++iter) {
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| 328 |     // skip store-session in printed list
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| 329 |     if ( ((*iter)->getName() != std::string("store-session"))
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| 330 |         && ((*iter)->getName() != std::string("load-session"))) {
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| 331 |       if (iter != actionqueue.begin())
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| 332 |         output << " ";
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| 333 |       (*iter)->outputAsCLI(output);
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| 334 |     }
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| 335 |   }
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| 336 |   output << std::endl;
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| 337 | }
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| 338 | 
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| 339 | void ActionQueue::outputAsPython(std::ostream &output) const
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| 340 | {
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| 341 |   const std::string prefix("pyMoleCuilder");
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| 342 |   output << "import " << prefix << std::endl;
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| 343 |   output << "# ========================== Stored Session BEGIN ==========================" << std::endl;
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| 344 |   for (ActionQueue_t::const_iterator iter = actionqueue.begin();
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| 345 |       iter != actionqueue.end();
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| 346 |       ++iter) {
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| 347 |     // skip store-session in printed list
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| 348 |     if ( ((*iter)->getName() != std::string("store-session"))
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| 349 |         && ((*iter)->getName() != std::string("load-session")))
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| 350 |       (*iter)->outputAsPython(output, prefix);
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| 351 |   }
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| 352 |   output << "# =========================== Stored Session END ===========================" << std::endl;
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| 353 | }
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| 354 | 
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| 355 | const ActionTrait& ActionQueue::getActionsTrait(const std::string &name) const
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| 356 | {
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| 357 |   // this const_cast is just required as long as we have a non-const getActionByName
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| 358 |   const Action & action = const_cast<ActionQueue *>(this)->getActionByName(name);
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| 359 |   return action.Traits;
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| 360 | }
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| 361 | 
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| 362 | void ActionQueue::addElement(Action* _Action,ActionState::ptr _state)
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| 363 | {
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| 364 |   history->addElement(_Action, _state);
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| 365 | }
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| 366 | 
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| 367 | void ActionQueue::clear()
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| 368 | {
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| 369 |   history->clear();
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| 370 | }
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| 371 | 
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| 372 | void ActionQueue::clearQueue(const size_t _fromAction)
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| 373 | {
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| 374 | #ifdef HAVE_ACTION_THREAD
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| 375 |   boost::recursive_mutex::scoped_lock lock(mtx_queue);
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| 376 | #endif
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| 377 |   LOG(1, "Removing all Actions from position " << _fromAction << " onward.");
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| 378 |   // free all actions still to be called contained in actionqueue
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| 379 |   ActionQueue_t::iterator inititer = actionqueue.begin();
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| 380 |   std::advance(inititer, _fromAction);
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| 381 |   for (ActionQueue_t::iterator iter = inititer; iter != actionqueue.end(); ++iter)
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| 382 |     delete *iter;
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| 383 |   actionqueue.erase(inititer, actionqueue.end());
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| 384 |   LOG(1, "There are " << actionqueue.size() << " remaining Actions.");
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| 385 | #ifdef HAVE_ACTION_THREAD
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| 386 |   CurrentAction = actionqueue.size();
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| 387 | #endif
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| 388 | }
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| 389 | 
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| 390 | #ifdef HAVE_ACTION_THREAD
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| 391 | void ActionQueue::clearTempQueue()
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| 392 | {
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| 393 |   // free all actions contained in tempqueue
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| 394 |   for (ActionQueue_t::iterator iter = tempqueue.begin();
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| 395 |       !tempqueue.empty(); iter = tempqueue.begin()) {
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| 396 |     delete *iter;
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| 397 |     tempqueue.erase(iter);
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| 398 |   }
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| 399 | }
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| 400 | 
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| 401 | void ActionQueue::setRunThreadIdle(const bool _flag)
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| 402 | {
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| 403 |   {
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| 404 |     boost::unique_lock<boost::mutex> lock(mtx_idle);
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| 405 |     run_thread_isIdle = _flag;
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| 406 |   }
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| 407 | }
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| 408 | #endif
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| 409 | 
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| 410 | const ActionQueue::ActionTokens_t ActionQueue::getListOfActions() const
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| 411 | {
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| 412 |   ActionTokens_t returnlist;
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| 413 | 
 | 
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| 414 |   returnlist.insert(
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| 415 |       returnlist.end(),
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|---|
| 416 |       MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getBeginIter()),
 | 
|---|
| 417 |       MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getEndIter()));
 | 
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| 418 | 
 | 
|---|
| 419 |   return returnlist;
 | 
|---|
| 420 | }
 | 
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| 421 | 
 | 
|---|
| 422 | void ActionQueue::undoLast()
 | 
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| 423 | {
 | 
|---|
| 424 |         history->undoLast();
 | 
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| 425 | }
 | 
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| 426 | 
 | 
|---|
| 427 | void ActionQueue::setMark() {
 | 
|---|
| 428 |   history->setMark();
 | 
|---|
| 429 | }
 | 
|---|
| 430 | 
 | 
|---|
| 431 | void ActionQueue::unsetMark() {
 | 
|---|
| 432 |   history->unsetMark();
 | 
|---|
| 433 | }
 | 
|---|
| 434 | 
 | 
|---|
| 435 | void ActionQueue::undoTillMark()
 | 
|---|
| 436 | {
 | 
|---|
| 437 |   history->undoTillMark();
 | 
|---|
| 438 | }
 | 
|---|
| 439 | 
 | 
|---|
| 440 | bool ActionQueue::canUndo() const
 | 
|---|
| 441 | {
 | 
|---|
| 442 |   return history->hasUndo();
 | 
|---|
| 443 | }
 | 
|---|
| 444 | 
 | 
|---|
| 445 | void ActionQueue::redoLast()
 | 
|---|
| 446 | {
 | 
|---|
| 447 |         history->redoLast();
 | 
|---|
| 448 | }
 | 
|---|
| 449 | 
 | 
|---|
| 450 | bool ActionQueue::canRedo() const
 | 
|---|
| 451 | {
 | 
|---|
| 452 |   return history->hasRedo();
 | 
|---|
| 453 | }
 | 
|---|
| 454 | 
 | 
|---|
| 455 | bool ActionQueue::isDryRun(const Action *_nextaction) const
 | 
|---|
| 456 | {
 | 
|---|
| 457 |   bool status = dryrun_flag;
 | 
|---|
| 458 |   status &= (_nextaction->getName() != "no-dry-run");
 | 
|---|
| 459 |   return status;
 | 
|---|
| 460 | }
 | 
|---|
| 461 | 
 | 
|---|
| 462 | CONSTRUCT_SINGLETON(ActionQueue)
 | 
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