| [628577] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2013 Frederik Heber. All rights reserved.
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 | 5 |  * 
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 | 6 |  *
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 | 7 |  *   This file is part of MoleCuilder.
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 | 8 |  *
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 | 9 |  *    MoleCuilder is free software: you can redistribute it and/or modify
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 | 10 |  *    it under the terms of the GNU General Public License as published by
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 | 11 |  *    the Free Software Foundation, either version 2 of the License, or
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 | 12 |  *    (at your option) any later version.
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 | 13 |  *
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 | 14 |  *    MoleCuilder is distributed in the hope that it will be useful,
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 | 15 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
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 | 16 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 | 17 |  *    GNU General Public License for more details.
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 | 18 |  *
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 | 19 |  *    You should have received a copy of the GNU General Public License
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 | 20 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
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 | 21 |  */
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 | 22 | 
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 | 23 | /*
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 | 24 |  * ActionQueue.cpp
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 | 25 |  *
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 | 26 |  *  Created on: Aug 16, 2013
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 | 27 |  *      Author: heber
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 | 28 |  */
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 | 29 | 
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 | 30 | // include config.h
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 | 31 | #ifdef HAVE_CONFIG_H
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 | 32 | #include <config.h>
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 | 33 | #endif
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 | 34 | 
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| [9eb71b3] | 35 | //#include "CodePatterns/MemDebug.hpp"
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| [628577] | 36 | 
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| [1d3563] | 37 | #include "Actions/ActionQueue.hpp"
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| [628577] | 38 | 
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| [690741] | 39 | #include "CodePatterns/Assert.hpp"
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 | 40 | #include "CodePatterns/IteratorAdaptors.hpp"
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| [46b181] | 41 | #include "CodePatterns/Log.hpp"
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| [628577] | 42 | #include "CodePatterns/Singleton_impl.hpp"
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 | 43 | 
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| [415ddd] | 44 | #include <boost/date_time/posix_time/posix_time.hpp>
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 | 45 | #include <boost/version.hpp>
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| [601ef8] | 46 | #include <iterator>
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| [46b181] | 47 | #include <string>
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 | 48 | #include <sstream>
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| [690741] | 49 | #include <vector>
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 | 50 | 
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| [0d4168] | 51 | #include "Actions/ActionExceptions.hpp"
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| [6367dd] | 52 | #include "Actions/ActionHistory.hpp"
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| [ed3944] | 53 | #include "Actions/ActionRegistry.hpp"
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| [559293] | 54 | #include "Actions/MakroAction.hpp"
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 | 55 | #include "Actions/Process.hpp"
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| [0d4168] | 56 | #include "World.hpp"
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| [ed3944] | 57 | 
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| [628577] | 58 | using namespace MoleCuilder;
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 | 59 | 
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| [29b52b] | 60 | const Action* ActionQueue::_lastchangedaction = NULL;
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 | 61 | 
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| [ed3944] | 62 | ActionQueue::ActionQueue() :
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| [29b52b] | 63 |     Observable("ActionQueue"),
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| [6367dd] | 64 |     AR(new ActionRegistry()),
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| [af5384] | 65 |     history(new ActionHistory),
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| [f3db60] | 66 |     lastActionOk(true),
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| [601ef8] | 67 |     CurrentAction(0),
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| [a87d1e2] | 68 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 69 |     run_thread(boost::bind(&ActionQueue::run, this)),
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| [f3db60] | 70 |     run_thread_isIdle(true),
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| [74459a] | 71 | #endif
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| [f3db60] | 72 |     dryrun_flag(false)
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| [29b52b] | 73 | {
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 | 74 |   // channels of observable
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 | 75 |   Channels *OurChannel = new Channels;
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| [574d377] | 76 |   Observable::insertNotificationChannel( std::make_pair(static_cast<Observable *>(this), OurChannel) );
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| [29b52b] | 77 |   // add instance for each notification type
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 | 78 |   for (size_t type = 0; type < NotificationType_MAX; ++type)
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 | 79 |     OurChannel->addChannel(type);
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 | 80 | }
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| [628577] | 81 | 
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 | 82 | ActionQueue::~ActionQueue()
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| [ed3944] | 83 | {
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| [74459a] | 84 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 85 |   stop();
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| [601ef8] | 86 | 
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 | 87 |   clearTempQueue();
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| [74459a] | 88 | #endif
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| [415ddd] | 89 | 
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| [7f1a1a] | 90 |   clearQueue();
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| [af5384] | 91 | 
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| [6367dd] | 92 |   delete history;
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| [ed3944] | 93 |   delete AR;
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 | 94 | }
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| [628577] | 95 | 
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| [f54cda] | 96 | void ActionQueue::queueAction(const std::string &name, enum Action::QueryOptions state)
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| [05c989] | 97 | {
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| [10aee4] | 98 |   const Action & registryaction = AR->getActionByName(name);
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 | 99 |   queueAction(®istryaction, state);
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| [f54cda] | 100 | }
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 | 101 | 
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| [7f1a1a] | 102 | void ActionQueue::queueAction(const Action * const _action, enum Action::QueryOptions state)
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| [f54cda] | 103 | {
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| [af5384] | 104 |   Action *newaction = _action->clone(state);
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 | 105 |   newaction->prepare(state);
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| [74459a] | 106 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 107 |   mtx_queue.lock();
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| [74459a] | 108 | #endif
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| [7fc447] | 109 |   actionqueue.push_back( newaction );
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| [74459a] | 110 | #ifndef HAVE_ACTION_THREAD
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 | 111 |   try {
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| [a87d1e2] | 112 |     if (!isDryRun(newaction)) {
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 | 113 |       CurrentAction = actionqueue.size()-1;
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| [f3db60] | 114 |       newaction->call();
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| [a87d1e2] | 115 |       CurrentAction = actionqueue.size();
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 | 116 |     }
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| [a61dbb] | 117 |     lastActionOk = true;
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| [74459a] | 118 |   } catch(ActionFailureException &e) {
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 | 119 |     std::cerr << "Action " << *boost::get_error_info<ActionNameString>(e) << " has failed." << std::endl;
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 | 120 |     World::getInstance().setExitFlag(5);
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| [601ef8] | 121 |     clearQueue(actionqueue.size()-1);
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| [a61dbb] | 122 |     lastActionOk = false;
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| [601ef8] | 123 |     std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [11d433] | 124 |   } catch (std::exception &e) {
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 | 125 |     pushStatus("FAIL: General exception caught, aborting.");
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 | 126 |     World::getInstance().setExitFlag(134);
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| [601ef8] | 127 |     clearQueue(actionqueue.size()-1);
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| [11d433] | 128 |     lastActionOk = false;
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| [601ef8] | 129 |     std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [74459a] | 130 |   }
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| [cfb9c5] | 131 |   if (lastActionOk) {
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 | 132 |     OBSERVE;
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 | 133 |     NOTIFY(ActionQueued);
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 | 134 |     _lastchangedaction = newaction;
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 | 135 |   }
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| [74459a] | 136 | #else
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| [415ddd] | 137 |   mtx_queue.unlock();
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| [a87d1e2] | 138 |   setRunThreadIdle(isIdle());
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| [74459a] | 139 | #endif
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| [05c989] | 140 | }
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 | 141 | 
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| [975b83] | 142 | void ActionQueue::insertAction(Action *_action, enum Action::QueryOptions state)
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 | 143 | {
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| [74459a] | 144 | #ifndef HAVE_ACTION_THREAD
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 | 145 |   queueAction(_action, state);
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 | 146 | #else
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| [415ddd] | 147 |   Action *newaction = _action->clone(state);
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 | 148 |   newaction->prepare(state);
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 | 149 |   mtx_queue.lock();
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 | 150 |   tempqueue.push_back( newaction );
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| [a87d1e2] | 151 |   const bool tempqueue_notempty = !tempqueue.empty();
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| [415ddd] | 152 |   mtx_queue.unlock();
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| [a87d1e2] | 153 |   setRunThreadIdle( !((!isIdle()) || tempqueue_notempty) );
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 | 154 | #endif
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 | 155 | }
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 | 156 | 
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 | 157 | bool ActionQueue::isIdle() const
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 | 158 | {
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 | 159 | #ifdef HAVE_ACTION_THREAD
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 | 160 |   boost::unique_lock<boost::mutex> lock(mtx_queue);
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| [74459a] | 161 | #endif
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| [a87d1e2] | 162 |   bool status = (CurrentAction == actionqueue.size());
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 | 163 |   return status;
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| [415ddd] | 164 | }
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 | 165 | 
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| [559293] | 166 | bool ActionQueue::isProcess() const
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 | 167 | {
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 | 168 |   if (isIdle())
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 | 169 |     return false;
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 | 170 |   const Process *possibleprocess = dynamic_cast<const Process *>(&getCurrentAction());
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 | 171 |   if (possibleprocess == NULL)
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 | 172 |     return false;
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 | 173 |   else
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 | 174 |     return true;
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 | 175 | }
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 | 176 | 
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 | 177 | bool ActionQueue::isMakroAction() const
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 | 178 | {
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 | 179 |   if (isIdle())
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 | 180 |     return false;
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 | 181 |   const MakroAction *possiblemakroaction = dynamic_cast<const MakroAction *>(&getCurrentAction());
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 | 182 |   if (possiblemakroaction == NULL)
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 | 183 |     return false;
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 | 184 |   else
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 | 185 |     return true;
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 | 186 | }
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 | 187 | 
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 | 188 | const Action& ActionQueue::getCurrentAction() const
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 | 189 | {
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 | 190 |   return *const_cast<const Action *>(actionqueue[CurrentAction]);
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 | 191 | }
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 | 192 | 
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| [74459a] | 193 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 194 | void ActionQueue::run()
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 | 195 | {
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 | 196 |   bool Interrupted = false;
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 | 197 |   do {
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 | 198 |     // sleep for some time and wait for queue to fill up again
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 | 199 |     try {
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 | 200 | #if BOOST_VERSION < 105000
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 | 201 |       run_thread.sleep(boost::get_system_time() + boost::posix_time::milliseconds(100));
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 | 202 | #else
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| [d93b4b3] | 203 |       boost::this_thread::sleep_for(boost::chrono::milliseconds(100));
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| [415ddd] | 204 | #endif
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 | 205 |     } catch(boost::thread_interrupted &e) {
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 | 206 |       LOG(2, "INFO: ActionQueue has received stop signal.");
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 | 207 |       Interrupted = true;
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 | 208 |     }
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 | 209 | //    LOG(1, "DEBUG: Start of ActionQueue's run() loop.");
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 | 210 |     // call all currently present Actions
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 | 211 |     mtx_queue.lock();
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 | 212 |     insertTempQueue();
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 | 213 |     mtx_queue.unlock();
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| [a87d1e2] | 214 |     bool status = !isIdle();
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| [415ddd] | 215 |     while (status) {
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 | 216 |       //      boost::this_thread::disable_interruption di;
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 | 217 |       LOG(0, "Calling Action " << actionqueue[CurrentAction]->getName() << " ... ");
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 | 218 |       try {
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| [f3db60] | 219 |         if (!isDryRun(actionqueue[CurrentAction]))
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 | 220 |           actionqueue[CurrentAction]->call();
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| [0b6b77] | 221 |         pushStatus("SUCCESS: Action "+actionqueue[CurrentAction]->getName()+" successful.");
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| [a61dbb] | 222 |         lastActionOk = true;
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| [415ddd] | 223 |       } catch(ActionFailureException &e) {
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| [0b6b77] | 224 |         pushStatus("FAIL: Action "+*boost::get_error_info<ActionNameString>(e)+" has failed.");
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| [415ddd] | 225 |         World::getInstance().setExitFlag(5);
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| [601ef8] | 226 |         clearQueue(CurrentAction);
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 | 227 |         clearTempQueue();
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| [a61dbb] | 228 |         lastActionOk = false;
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| [601ef8] | 229 |         std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [11d433] | 230 |       } catch (std::exception &e) {
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 | 231 |         pushStatus("FAIL: General exception caught, aborting.");
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 | 232 |         World::getInstance().setExitFlag(134);
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| [601ef8] | 233 |         clearQueue(CurrentAction);
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 | 234 |         clearTempQueue();
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| [d8255b] | 235 |         lastActionOk = false;
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| [601ef8] | 236 |         std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [415ddd] | 237 |       }
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| [cfb9c5] | 238 |       if (lastActionOk) {
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 | 239 |         OBSERVE;
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 | 240 |         NOTIFY(ActionQueued);
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 | 241 |         _lastchangedaction = actionqueue[CurrentAction];
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| [601ef8] | 242 |         mtx_queue.lock();
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 | 243 |         CurrentAction++;
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 | 244 |         mtx_queue.unlock();
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| [cfb9c5] | 245 |       }
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| [415ddd] | 246 |       // access actionqueue, hence using mutex
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 | 247 |       mtx_queue.lock();
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 | 248 |       // insert new actions (before [CurrentAction]) if they have been spawned
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 | 249 |       // we must have an extra vector for this, as we cannot change actionqueue
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 | 250 |       // while an action instance is "in-use"
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 | 251 |       insertTempQueue();
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 | 252 |       mtx_queue.unlock();
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| [a87d1e2] | 253 |       status = !isIdle();
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| [415ddd] | 254 |     }
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| [a87d1e2] | 255 |     mtx_queue.lock();
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 | 256 |     const bool tempqueue_notempty = !tempqueue.empty();
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 | 257 |     mtx_queue.unlock();
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 | 258 |     setRunThreadIdle( !((!isIdle()) || tempqueue_notempty) );
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| [415ddd] | 259 |     cond_idle.notify_one();
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 | 260 | //    LOG(1, "DEBUG: End of ActionQueue's run() loop.");
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 | 261 |   } while (!Interrupted);
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 | 262 | }
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 | 263 | 
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 | 264 | void ActionQueue::insertTempQueue()
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 | 265 | {
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 | 266 |   if (!tempqueue.empty()) {
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 | 267 |     ActionQueue_t::iterator InsertionIter = actionqueue.begin();
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 | 268 |     std::advance(InsertionIter, CurrentAction);
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 | 269 |     actionqueue.insert( InsertionIter, tempqueue.begin(), tempqueue.end() );
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 | 270 |     tempqueue.clear();
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 | 271 |   }
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 | 272 | }
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 | 273 | 
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 | 274 | void ActionQueue::wait()
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 | 275 | {
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 | 276 |   boost::unique_lock<boost::mutex> lock(mtx_idle);
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 | 277 |   while(!run_thread_isIdle)
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 | 278 |   {
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 | 279 |       cond_idle.wait(lock);
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 | 280 |   }
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 | 281 | }
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| [74459a] | 282 | #endif
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| [415ddd] | 283 | 
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| [74459a] | 284 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 285 | void ActionQueue::stop()
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 | 286 | {
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 | 287 |   // notify actionqueue thread that we wish to terminate
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 | 288 |   run_thread.interrupt();
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 | 289 |   // wait till it ends
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 | 290 |   run_thread.join();
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| [975b83] | 291 | }
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| [74459a] | 292 | #endif
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| [975b83] | 293 | 
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| [10aee4] | 294 | const Action& ActionQueue::getActionByName(const std::string &name)
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| [1d3563] | 295 | {
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| [ed3944] | 296 |   return AR->getActionByName(name);
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| [1d3563] | 297 | }
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 | 298 | 
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| [a6ceab] | 299 | bool ActionQueue::isActionKnownByName(const std::string &name) const
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| [1d3563] | 300 | {
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| [ed3944] | 301 |   return AR->isActionPresentByName(name);
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| [1d3563] | 302 | }
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 | 303 | 
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| [126867] | 304 | void ActionQueue::registerAction(Action *_action)
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 | 305 | {
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 | 306 |   AR->registerInstance(_action);
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 | 307 | }
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 | 308 | 
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| [46b181] | 309 | void ActionQueue::outputAsCLI(std::ostream &output) const
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 | 310 | {
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| [7fc447] | 311 |   for (ActionQueue_t::const_iterator iter = actionqueue.begin();
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 | 312 |       iter != actionqueue.end();
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| [46b181] | 313 |       ++iter) {
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| [bad589] | 314 |     // skip store-session in printed list
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| [12d946] | 315 |     if ( ((*iter)->getName() != std::string("store-session"))
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 | 316 |         && ((*iter)->getName() != std::string("load-session"))) {
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| [7fc447] | 317 |       if (iter != actionqueue.begin())
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| [bad589] | 318 |         output << " ";
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 | 319 |       (*iter)->outputAsCLI(output);
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 | 320 |     }
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| [46b181] | 321 |   }
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 | 322 |   output << std::endl;
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 | 323 | }
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 | 324 | 
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| [477012] | 325 | void ActionQueue::outputAsPython(std::ostream &output) const
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 | 326 | {
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 | 327 |   const std::string prefix("pyMoleCuilder");
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 | 328 |   output << "import " << prefix << std::endl;
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| [9e4655] | 329 |   output << "# ========================== Stored Session BEGIN ==========================" << std::endl;
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| [7fc447] | 330 |   for (ActionQueue_t::const_iterator iter = actionqueue.begin();
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 | 331 |       iter != actionqueue.end();
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| [477012] | 332 |       ++iter) {
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 | 333 |     // skip store-session in printed list
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| [12d946] | 334 |     if ( ((*iter)->getName() != std::string("store-session"))
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 | 335 |         && ((*iter)->getName() != std::string("load-session")))
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| [477012] | 336 |       (*iter)->outputAsPython(output, prefix);
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 | 337 |   }
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| [9e4655] | 338 |   output << "# =========================== Stored Session END ===========================" << std::endl;
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| [477012] | 339 | }
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 | 340 | 
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| [a6ceab] | 341 | const ActionTrait& ActionQueue::getActionsTrait(const std::string &name) const
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| [690741] | 342 | {
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 | 343 |   // this const_cast is just required as long as we have a non-const getActionByName
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| [10aee4] | 344 |   const Action & action = const_cast<ActionQueue *>(this)->getActionByName(name);
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 | 345 |   return action.Traits;
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| [690741] | 346 | }
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 | 347 | 
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| [6367dd] | 348 | void ActionQueue::addElement(Action* _Action,ActionState::ptr _state)
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 | 349 | {
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 | 350 |   history->addElement(_Action, _state);
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 | 351 | }
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 | 352 | 
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 | 353 | void ActionQueue::clear()
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 | 354 | {
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 | 355 |   history->clear();
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 | 356 | }
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 | 357 | 
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| [601ef8] | 358 | void ActionQueue::clearQueue(const size_t _fromAction)
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| [7f1a1a] | 359 | {
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| [601ef8] | 360 | #ifdef HAVE_ACTION_THREAD
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 | 361 |   mtx_queue.lock();
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 | 362 | #endif
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 | 363 |   LOG(1, "Removing all Actions from position " << _fromAction << " onward.");
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 | 364 |   // free all actions still to be called contained in actionqueue
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 | 365 |   ActionQueue_t::iterator inititer = actionqueue.begin();
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 | 366 |   std::advance(inititer, _fromAction);
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 | 367 |   for (ActionQueue_t::iterator iter = inititer; iter != actionqueue.end(); ++iter)
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| [7f1a1a] | 368 |     delete *iter;
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| [601ef8] | 369 |   actionqueue.erase(inititer, actionqueue.end());
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 | 370 |   LOG(1, "There are " << actionqueue.size() << " remaining Actions.");
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 | 371 | #ifdef HAVE_ACTION_THREAD
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 | 372 |   CurrentAction = actionqueue.size();
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 | 373 |   mtx_queue.unlock();
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 | 374 | #endif
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 | 375 | }
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 | 376 | 
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 | 377 | #ifdef HAVE_ACTION_THREAD
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 | 378 | void ActionQueue::clearTempQueue()
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 | 379 | {
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| [7f1a1a] | 380 |   // free all actions contained in tempqueue
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 | 381 |   for (ActionQueue_t::iterator iter = tempqueue.begin();
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 | 382 |       !tempqueue.empty(); iter = tempqueue.begin()) {
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 | 383 |     delete *iter;
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 | 384 |     tempqueue.erase(iter);
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 | 385 |   }
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| [601ef8] | 386 | }
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 | 387 | 
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 | 388 | void ActionQueue::setRunThreadIdle(const bool _flag)
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 | 389 | {
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|---|
| [06b5df] | 390 |   {
 | 
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 | 391 |     boost::unique_lock<boost::mutex> lock(mtx_idle);
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| [601ef8] | 392 |     run_thread_isIdle = _flag;
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| [06b5df] | 393 |   }
 | 
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| [7f1a1a] | 394 | }
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| [601ef8] | 395 | #endif
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| [6367dd] | 396 | 
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| [690741] | 397 | const ActionQueue::ActionTokens_t ActionQueue::getListOfActions() const
 | 
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 | 398 | {
 | 
|---|
 | 399 |   ActionTokens_t returnlist;
 | 
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 | 400 | 
 | 
|---|
 | 401 |   returnlist.insert(
 | 
|---|
 | 402 |       returnlist.end(),
 | 
|---|
| [ed3944] | 403 |       MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getBeginIter()),
 | 
|---|
 | 404 |       MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getEndIter()));
 | 
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| [690741] | 405 | 
 | 
|---|
 | 406 |   return returnlist;
 | 
|---|
 | 407 | }
 | 
|---|
 | 408 | 
 | 
|---|
| [6367dd] | 409 | void ActionQueue::undoLast()
 | 
|---|
 | 410 | {
 | 
|---|
 | 411 |         history->undoLast();
 | 
|---|
 | 412 | }
 | 
|---|
 | 413 | 
 | 
|---|
| [0ec9f5] | 414 | void ActionQueue::setMark() {
 | 
|---|
 | 415 |   history->setMark();
 | 
|---|
 | 416 | }
 | 
|---|
 | 417 | 
 | 
|---|
 | 418 | void ActionQueue::unsetMark() {
 | 
|---|
 | 419 |   history->unsetMark();
 | 
|---|
 | 420 | }
 | 
|---|
 | 421 | 
 | 
|---|
 | 422 | void ActionQueue::undoTillMark()
 | 
|---|
 | 423 | {
 | 
|---|
 | 424 |   history->undoTillMark();
 | 
|---|
 | 425 | }
 | 
|---|
 | 426 | 
 | 
|---|
| [c01fec] | 427 | bool ActionQueue::canUndo() const
 | 
|---|
 | 428 | {
 | 
|---|
 | 429 |   return history->hasUndo();
 | 
|---|
 | 430 | }
 | 
|---|
 | 431 | 
 | 
|---|
| [6367dd] | 432 | void ActionQueue::redoLast()
 | 
|---|
 | 433 | {
 | 
|---|
 | 434 |         history->redoLast();
 | 
|---|
 | 435 | }
 | 
|---|
 | 436 | 
 | 
|---|
| [c01fec] | 437 | bool ActionQueue::canRedo() const
 | 
|---|
 | 438 | {
 | 
|---|
 | 439 |   return history->hasRedo();
 | 
|---|
 | 440 | }
 | 
|---|
 | 441 | 
 | 
|---|
| [f3db60] | 442 | bool ActionQueue::isDryRun(const Action *_nextaction) const
 | 
|---|
 | 443 | {
 | 
|---|
 | 444 |   bool status = dryrun_flag;
 | 
|---|
 | 445 |   status &= (_nextaction->getName() != "no-dry-run");
 | 
|---|
 | 446 |   return status;
 | 
|---|
 | 447 | }
 | 
|---|
| [6367dd] | 448 | 
 | 
|---|
| [628577] | 449 | CONSTRUCT_SINGLETON(ActionQueue)
 | 
|---|