Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | 
            Last change
 on this file since 97445f was             6029a6, checked in by Frederik Heber <heber@…>, 11 years ago           | 
        
        
          | 
             
Added largely extended userguide with some images into subfolder of doc folder. 
 
- Munched docbook into something workable:
- the big problem was out-of-source build in conjunction with the figures in
the userguide.
 - I did not try hard enough with img.src.path but used entityref instead
together with a catalog file.
 - so in all, we have followed:
 - ... this was a long way ...
 - am_conditioning on both xsltproc and fop.
 
   
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100644
               
             
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| 2 |     font-family: sans-serif;
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| 3 |     font-size: 10pt;
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| 4 |     color: black;
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| 5 |     background-color: white;
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| 6 | }
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| 7 | 
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| 8 | h1,
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| 9 | h2,
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| 10 | h3,
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| 11 | h4,
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| 12 | h5,
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| 13 | h6 {
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| 14 |     color: #394986;
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| 15 |     font-height: bold;
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| 16 |     margin-top: 1.33ex;
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| 17 |     margin-bottom: 1.33ex;
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| 18 | }
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| 19 | 
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| 20 | h1 {
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| 21 |     font-size: 1.8em;
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| 22 | }
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| 23 | 
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| 24 | h2 {
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| 25 |     font-size: 1.6em;
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| 26 | }
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| 27 | 
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| 28 | h3 {
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| 29 |     font-size: 1.4em;
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| 30 | }
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| 31 | 
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| 32 | h4 {
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| 33 |     font-size: 1.2em;
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| 34 | }
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| 35 | 
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| 36 | h5,
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| 37 | h6 {
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| 38 |     font-size: 1em;
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| 39 | }
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| 40 | 
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| 41 | table {
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| 42 |     border-spacing: 0;
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| 43 |     font-size: 1em;
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| 44 | }
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| 45 | 
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| 46 | thead,
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| 47 | tfoot {
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| 48 |     background-color: #EEEEEE;
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| 49 | }
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| 50 | 
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| 51 | th,
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| 52 | td {
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| 53 |     padding: 0 0.5ex;
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| 54 | }
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| 55 | 
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| 56 | blockquote {
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| 57 |     margin-top: 1.33ex 4ex;
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| 58 | }
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| 59 | 
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| 60 | p,
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| 61 | th,
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| 62 | td,
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| 63 | li,
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| 64 | dt,
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| 65 | dd {
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| 66 |     font-size: 1em;
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| 67 | }
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| 68 | 
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| 69 | p,
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| 70 | pre,
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| 71 | ol,
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| 72 | dl,
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| 73 | ul,
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| 74 | table {
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| 75 |     margin-top: 1.33ex;
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| 76 |     margin-bottom: 1.33ex;
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| 77 | }
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| 78 | 
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| 79 | code,
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| 80 | kbd,
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| 81 | tt,
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| 82 | pre {
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| 83 |     font-family: monospace;
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| 84 |     font-size: 90%;
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| 85 | }
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| 86 | 
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| 87 | pre {
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| 88 |     white-space: pre;
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| 89 |     background-color: #EEEEEE;
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| 90 |     border: 1px solid #C0C0C0;
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| 91 |     padding: 1ex;
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| 92 | }
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| 93 | 
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| 94 | li {
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| 95 |     margin-top: 1.33ex;
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| 96 |     margin-bottom: 1.33ex;
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| 97 | }
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| 98 | 
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| 99 | *[compact] > li {
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| 100 |     margin-top: 0;
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| 101 |     margin-bottom: 0;
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| 102 | }
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| 103 | 
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| 104 | dt {
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| 105 |     margin-top: 1.33ex;
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| 106 |     margin-bottom: 0;
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| 107 | }
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| 108 | 
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| 109 | dd {
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| 110 |     margin-top: 0;
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| 111 |     margin-bottom: 1.33ex;
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| 112 | }
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| 113 | 
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| 114 | *[compact] > dt {
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| 115 |     margin-top: 0;
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| 116 | }
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| 117 | 
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| 118 | *[compact] > dd {
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| 119 |     margin-bottom: 0;
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| 120 | }
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| 121 | 
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| 122 | div.toc,
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| 123 | div.index,
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| 124 | div.list-of-figures,
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| 125 | div.list-of-tables,
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| 126 | div.list-of-examples,
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| 127 | div.list-of-equations,
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| 128 | div.list-of-procedures {
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| 129 |     margin-top: 1.33ex;
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| 130 |     margin-bottom: 1.33ex;
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| 131 | }
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| 132 | 
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| 133 | div.toc dl,
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| 134 | div.index dl,
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| 135 | div.list-of-figures dl,
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| 136 | div.list-of-tables dl,
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| 137 | div.list-of-examples dl,
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| 138 | div.list-of-equations dl,
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| 139 | div.list-of-procedures dl {
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| 140 |     margin-top: 0;
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| 141 |     margin-bottom: 0;
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| 142 | }
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| 143 | 
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| 144 | div.toc dt,
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| 145 | div.index dt,
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| 146 | div.list-of-figures dt,
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| 147 | div.list-of-tables dt,
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| 148 | div.list-of-examples dt,
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| 149 | div.list-of-equations dt,
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| 150 | div.list-of-procedures dt {
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| 151 |     margin-top: 0.25ex;
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| 152 |     margin-bottom: 0.25ex;
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| 153 | }
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| 154 | 
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| 155 | div.toc dd,
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| 156 | div.index dd,
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| 157 | div.list-of-figures dd,
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| 158 | div.list-of-tables dd,
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| 159 | div.list-of-examples dd,
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| 160 | div.list-of-equations dd,
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| 161 | div.list-of-procedures dd {
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| 162 |     margin-top: 0;
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| 163 |     margin-bottom: 0;
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| 164 | }
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| 165 | 
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| 166 | div.toc span.part,
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| 167 | div.toc span.chapter,
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| 168 | div.toc span.appendix {
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| 169 |     font-weight: bold;
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| 170 | }
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| 171 | 
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| 172 | div.attribution {
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| 173 |     text-align: right;
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| 174 | }
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| 175 | 
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| 176 | div.sidebar {
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| 177 |     background-color: #EEEEFF;
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| 178 |     border: 1px solid #C0C0DD;
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| 179 |     padding: 1ex;
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| 180 |     margin-top: 1.33ex;
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| 181 |     margin-bottom: 1.33ex;
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| 182 | }
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| 183 | 
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| 184 | div.sidebar > p.title {
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| 185 |     margin-top: 0.33ex;
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| 186 | }
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| 187 | 
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| 188 | div.example > p.title,
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| 189 | div.figure > p.title,
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| 190 | div.table > p.title,
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| 191 | div.procedure > p.title,
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| 192 | div.equation > p.title {
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| 193 |     color: #394986;
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| 194 |     font-weight: bold;
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| 195 | }
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| 196 | 
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| 197 | div.orderedlist,
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| 198 | div.calloutlist {
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| 199 |     margin-top: 1.33ex;
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| 200 |     margin-bottom: 1.33ex;
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| 201 | }
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| 202 | 
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| 203 | div.orderedlist > table,
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| 204 | div.calloutlist > table {
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| 205 |     margin: 0;
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| 206 | }
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| 207 | 
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| 208 | div.orderedlist > table td,
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| 209 | div.calloutlist > table td {
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| 210 |     vertical-align: baseline;
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| 211 | }
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| 212 | 
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| 213 | div.footnote {
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| 214 |     font-size: 0.9em;
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| 215 | }
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| 216 | 
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| 217 | a:link:hover,
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| 218 | a:visited:hover {
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| 219 |     text-decoration: underline;
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| 220 | }
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| 221 | 
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| 222 | a:link {
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| 223 |     text-decoration: none;
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| 224 |     color: #004668;
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| 225 | }
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| 226 | 
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| 227 | a:visited {
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| 228 |     text-decoration: none;
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| 229 |     color: #135678;
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| 230 | }
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| 231 | 
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| 232 | span.term {
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| 233 |     font-weight: bold;
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| 234 | }
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| 235 | 
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| 236 | abbr,
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| 237 | acronym {
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| 238 |     font-weight: bold;
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| 239 | }
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| 240 | 
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| 241 | span.keycap,
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| 242 | span.keycode,
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| 243 | span.keysym,
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| 244 | span.mousebutton {
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| 245 |     font-family: monospace;
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| 246 |     font-size: 90%;
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| 247 |     background-color: #EEEEEE;
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| 248 |     padding: 0.2ex;
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| 249 | }
 | 
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| 250 | 
 | 
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| 251 | span.guimenu,
 | 
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| 252 | span.guisubmenu,
 | 
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| 253 | span.guimenuitem,
 | 
|---|
| 254 | span.guibutton,
 | 
|---|
| 255 | span.guiicon,
 | 
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| 256 | span.interface,
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| 257 | span.guilabel {
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| 258 |     font-weight: bold;
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| 259 | }
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| 260 | 
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| 261 | a img {
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| 262 |     border-style: none;
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| 263 | }
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| 264 | 
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| 265 | hr.footnote-hr {
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| 266 |     width: 100px;
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| 267 |     margin-left: 0;
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| 268 |     text-align: left;
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| 269 | }
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| 270 | 
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| 271 | /* ------------------------------------------------------------------------
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| 272 |  | Syntax highlighting
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| 273 |  +------------------------------------------------------------------------- */
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| 274 | 
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| 275 | .hl-keyword {
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| 276 |     font-weight: bold;
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| 277 |     color: #602060;
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| 278 | }
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| 279 | 
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| 280 | .hl-string {
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| 281 |     color: #A00000;
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| 282 | }
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| 283 | 
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| 284 | .hl-number {
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| 285 |     color: #B08000;
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| 286 | }
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| 287 | 
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| 288 | .hl-comment {
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| 289 |     font-style: italic;
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| 290 |     color: #808080;
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| 291 | }
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| 292 | 
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| 293 | .hl-doccomment {
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| 294 |     color: #008080;
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| 295 | }
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| 296 | 
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| 297 | .hl-directive {
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| 298 |     color: #00A000;
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| 299 | }
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| 300 | 
 | 
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| 301 | .hl-annotation {
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| 302 |     font-weight: bold;
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| 303 |     color: #808080;
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| 304 | }
 | 
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| 305 | 
 | 
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| 306 | /*
 | 
|---|
| 307 |  * XML
 | 
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| 308 |  */
 | 
|---|
| 309 | 
 | 
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| 310 | .hl-tag {
 | 
|---|
| 311 |     font-weight: bold;
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| 312 |     color: #602060;
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| 313 | }
 | 
|---|
| 314 | 
 | 
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| 315 | .hl-attribute {
 | 
|---|
| 316 |     color: #0050A0;
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| 317 | }
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|---|
| 318 | 
 | 
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| 319 | .hl-value {
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|---|
| 320 |     color: #A00000;
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|---|
| 321 | }
 | 
|---|
| 322 | 
 | 
|---|
| 323 | .hl-doctype {
 | 
|---|
| 324 |     color: #008080;
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|---|
| 325 | }
 | 
|---|
       
      
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