source: configure.ac@ aa6c75

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since aa6c75 was 30c753, checked in by Frederik Heber <heber@…>, 13 years ago

Removed atomSet atoms in class molecule and replaced by a boost::transform_iterator.

  • atoms causes us a O(N2) complexity due to having to remove atoms from this linearized vector (in O(N) not O(log N) as for the atomIds.
  • marked Molecules/BondFile and Tesselation/BigNonConvex as XFAIL due to interchanged ids.
  • thanks to Jan Hamaekers for pointing this out.
  • NOTE: so far we have not specialized molecule::const_iterator, it simply points to molecule::iterator.
  • Property mode set to 100644
File size: 9.3 KB
Line 
1# -*- Autoconf -*-
2# Process this file with autoconf to produce a configure script.
3
4AC_PREREQ(2.59)
5AC_INIT(MoleCuilder, 1.2.0, [heber@ins.uni-bonn.de], [molecuilder], [http://trac.ins.uni-bonn.de/projects/molecuilder/])
6AC_CONFIG_AUX_DIR([build-aux])
7AC_CONFIG_SRCDIR([src/builder.cpp])
8AC_CONFIG_HEADER([config.h libmolecuilder_config.h])
9AC_CONFIG_MACRO_DIR([m4])
10AC_CONFIG_SUBDIRS([LinearAlgebra])
11
12# parallel-tests: use parallel test druver
13# color-tests: us coloring to indicate success/failure when available
14# tar-pax: use newer tar implementation with longer filename (>99 chars)
15AM_INIT_AUTOMAKE([dist-bzip2 1.5 parallel-tests color-tests tar-pax])
16
17# Checks for programs.
18AM_PATH_CPPUNIT(1.9.6)
19AC_PROG_CXX
20AC_PROG_CC
21AC_PROG_INSTALL
22
23dnl Check if we have enable python
24# python module
25AC_MSG_CHECKING(whether to enable python module)
26AC_ARG_ENABLE(
27 [python],
28 AS_HELP_STRING([--enable-python],[turn on python module [default=yes]]),
29 enable_python=$enableval,
30 enable_python="yes")
31AC_MSG_RESULT($enable_python)
32AS_IF([test x"$enable_python" != x"no"],[
33 # Python (for boost::python)
34 AM_PATH_PYTHON([2.2])
35 AX_PYTHON
36 AC_DEFINE(HAVE_PYTHON,1, ["Build python module and scripts."])
37])
38AM_CONDITIONAL([CONDPYTHON], [test x"$enable_python" != x"no"])
39AC_SUBST(HAVE_PYTHON)
40
41dnl Check if we have enable qtgui
42# Qt programs
43AC_ARG_WITH(
44 [Qt-bin],
45 [AS_HELP_STRING([--with-Qt-bin], [give path to Qt binaries])],
46 [have_qtgui_path=$withval
47 enable_qtgui="yes"],
48 have_qtgui_path="")
49AC_MSG_CHECKING(whether to enable Qt-based GUI)
50AC_ARG_ENABLE(
51 [qtgui],
52 AS_HELP_STRING([--enable-qtgui],[turn on Qt GUI compilation [default=yes]]),
53 enable_qtgui=$enableval,
54 enable_qtgui="yes")
55AC_MSG_RESULT($enable_qtgui)
56AS_IF([test x"$enable_qtgui" != x"no"],[
57 AC_PATH_PROGS([QT_MOC],
58 [moc-qt4 moc],
59 [AC_MSG_ERROR(["Qts moc not found, please use --with-Qt-bin."])],
60 [$have_qtgui_path]
61 )
62 AC_PATH_PROGS([QT_UIC],
63 [uic-qt4 uic],
64 [AC_MSG_ERROR(["Qts uic not found, please use --with-Qt-bin."])],
65 [$have_qtgui_path]
66 )
67 PKG_CHECK_MODULES([QT], [QtCore QtGui Qt3D], [
68 ])
69 AC_SUBST([QT_CFLAGS])
70 AC_SUBST([QT_LIBS])
71 AC_DEFINE(HAVE_QTGUI,1, ["Build Qt-based GUI"])
72])
73AM_CONDITIONAL([CONDQTGUI], [test x"$enable_qtgui" != x"no"])
74AC_SUBST(HAVE_QTGUI)
75
76# use doxygen
77DX_HTML_FEATURE(ON)
78DX_PS_FEATURE(OFF)
79DX_PDF_FEATURE(OFF)
80DX_INIT_DOXYGEN(MoleCuilder, Doxyfile, ${docdir})
81
82# use libtool
83LT_INIT([static])
84
85# Define these substitions here to keep all version information in one place.
86# For information on how to properly maintain the library version information,
87# refer to the libtool manual, section "Updating library version information":
88# http://www.gnu.org/software/libtool/manual/html_node/Updating-version-info.html
89AC_SUBST([MOLECUILDER_SO_VERSION], [6:0:0])
90AC_SUBST([MOLECUILDER_API_VERSION], [1.2.0])
91
92dnl this macro is used to get the arguments supplied
93dnl to the configure script (./configure --enable-debug)
94dnl Check if we have enable debug support.
95AC_MSG_CHECKING(whether to enable debugging)
96have_debug="no"
97AC_ARG_ENABLE(
98 [debug],
99 AS_HELP_STRING([--enable-debug],[turn on debugging [default=no]]),
100 enable_debug=$enableval,
101 enable_debug="no")
102AC_MSG_RESULT($enable_debug)
103AS_IF([test x"$enable_debug" = x"yes"],[
104 AC_DEFINE(MEMDEBUG,1, ["Use memory debugger."])
105 AC_DEFINE(HAVE_DEBUG,1, ["Use debug setting to compile code."])
106 have_debug="yes"
107],[
108 AS_IF([test x"$enable_debug" = x"full"],[
109 AC_DEFINE(MEMDEBUG,1, ["Use memory debugger."])
110 AC_DEFINE(LOG_OBSERVER,1, ["Use observer log."])
111 AC_DEFINE(HAVE_DEBUG,2, ["Use debug setting to compile code."])
112 AC_DEFINE(QT_DEBUG,, ["Enable Qt debug messages."])
113 have_debug="full"
114 ],[
115 AC_DEFINE(NDEBUG,1, ["Don't compile in debugging code."])
116 AC_DEFINE(HAVE_DEBUG,0, ["Use debug setting to compile code."])
117 AC_DEFINE(QT_NO_DEBUG,, ["Disable Qt debug messages."])
118 have_debug="no"
119 ])
120])
121AC_SUBST(HAVE_DEBUG)
122
123dnl this macro is used to get the arguments supplied
124dnl to the configure script (./configure --enable-debug)
125dnl Check if we have enable debug support.
126AC_MSG_CHECKING(whether to enable internal caching/lazy evaluation)
127AC_ARG_ENABLE(
128 [cache],
129 AS_HELP_STRING([--enable-cache],[turn on internal lazy evaluation [default=yes]]),
130 enable_cache=$enableval,
131 enable_cache="yes")
132AC_MSG_RESULT($enable_cache)
133AS_IF([test x"$enable_cache" != x"no"],[
134 AC_DEFINE(HAVE_CACHE,1, ["cache variables to speed up the code."])
135],[
136 AC_DEFINE(NO_CACHING,1, ["Don't use caching code."])
137 AC_DEFINE(HAVE_CACHE,0, ["cache variables to speed up the code."])
138])
139AC_SUBST(HAVE_CACHE)
140
141# Checks for libraries.
142AC_CHECK_LIB(m, sqrt, , AC_MSG_ERROR([compatible libc math library not found]))
143
144# Boost
145BOOST_REQUIRE([1.40])
146
147# Boost headers only
148BOOST_ANY
149BOOST_BIND
150BOOST_CONVERSION
151BOOST_EXCEPTION
152BOOST_FOREACH
153BOOST_FUNCTION
154BOOST_ITERATOR
155BOOST_PREPROCESSOR
156BOOST_RANDOM
157BOOST_SMART_PTR
158BOOST_STRING_ALGO
159BOOST_TOKENIZER
160
161# Boost headers with libraries
162BOOST_FILESYSTEM
163BOOST_PROGRAM_OPTIONS
164AS_IF([test x"$enable_python" != x"no"], [BOOST_PYTHON])
165BOOST_SERIALIZATION
166BOOST_THREADS
167
168
169# CodePatterns library (needs corrected ax_codepatterns.m4 for boost compile flags in test)
170AM_PATH_CODEPATTERNS([1.1.7], $have_debug,,[AC_MSG_ERROR([Missing CodePatterns library, please specify PKG_CONFIG_PATH or use --with-codepatterns...])])
171
172# Checks for header files.
173AC_HEADER_STDC
174AC_CHECK_HEADERS([sys/time.h])
175AC_HEADER_STDBOOL
176
177AC_FUNC_MALLOC
178AC_FUNC_REALLOC
179AC_CHECK_FUNCS([floor pow sqrt strchr])
180
181# Checks for typedefs, structures, and compiler characteristics.
182AC_C_CONST
183AC_C_INLINE
184AC_C_RESTRICT
185AC_TYPE_SIZE_T
186
187# Checks for library functions.
188# check for GNU Scientific Library
189AC_CHECK_HEADERS([gsl/gsl_blas.h])
190AC_SEARCH_LIBS(dnrm2, gslblas gslcblas goto blas cblas)
191AC_SEARCH_LIBS(cblas_dnrm2, gslblas gslcblas blas cblas)
192AC_SEARCH_LIBS(gsl_blas_dnrm2,, gsl)
193#AC_CHECK_LIB(gsl, gsl_blas_dnrm2, , [AC_MSG_ERROR(["No working BLAS found for GSL, stopping."])])
194AC_CHECK_LIB(gsl, main)
195
196# use CppUnit TestRunner or not
197AC_MSG_CHECKING(whether to enable ECut TestRunnerClient)
198AC_ARG_ENABLE(
199 [ecut],
200 AS_HELP_STRING([--enable-ecut],[Use ECut TestRunnerClient [default=no]]),
201 enable_ecut=$disableval,
202 enable_ecut="no")
203AC_MSG_RESULT($enable_ecut)
204AS_IF([test x"$enable_ecut" = x"yes"],[
205 AC_DEFINE(HAVE_ECUT,1, ["Use ECut TestRunnerClient instead of our own."])
206 AC_SUBST(HAVE_ECUT)
207])
208
209# with valgrinding testsuite or not
210AC_MSG_CHECKING(whether to enable valgrind memory checking in testsuite)
211AC_ARG_ENABLE(
212 [valgrind],
213 AS_HELP_STRING([--enable-valgrind],[Use Valgrind on the testsuite [default=no]]),
214 enable_valgrind=$enableval,
215 enable_valgrind="no")
216AC_MSG_RESULT($enable_valgrind)
217AS_IF([test x"$enable_valgrind" = x"yes"], [
218 AC_CHECK_HEADER([valgrind/valgrind.h],
219 [
220 # check header
221 AC_DEFINE(HAVE_VALGRIND_TESTSUITE,1, ["Use Valgrind to check the testsuite."])
222 # check path
223 AC_PATH_PROG(VALGRIND, [valgrind], [/bin/false])
224 # set variables
225 AC_SUBST(HAVE_VALGRIND_TESTSUITE)
226 AC_SUBST(VALGRIND)
227 ],
228 [
229 AC_MSG_ERROR(["Valgrind support requested but headers not available."])
230 ]
231 )
232])
233
234# Check for "extern inline", using a modified version
235# of the test for AC_C_INLINE from acspecific.mt
236AC_CACHE_CHECK([for extern inline], ac_cv_c_extern_inline,
237[ac_cv_c_extern_inline=no
238AC_TRY_COMPILE([extern $ac_cv_c_inline double foo(double x);
239extern $ac_cv_c_inline double foo(double x) { return x+1.0; };
240double foo (double x) { return x + 1.0; };],
241[ foo(1.0) ],
242[ac_cv_c_extern_inline="yes"])
243])
244
245if test "$ac_cv_c_inline" != no ; then
246 AC_DEFINE(HAVE_INLINE,1, ["May use inline routines"])
247 AC_SUBST(HAVE_INLINE)
248fi
249
250#AC_MSG_NOTICE(["CFLAGS: $CFLAGS, CXXFLAGS: $CXXFLAGS, LDFLAGS: $LDFLAGS, CC: $CC, CXX:, $CXX, MPICC: $MPICC, MPILIBS: $MPILIBS, LIBS: $LIBS"])
251
252# test suite
253
254AC_CONFIG_FILES([
255 tests/Makefile])
256
257AC_CONFIG_TESTDIR(tests/CodeChecks)
258AC_CONFIG_FILES([
259 tests/CodeChecks/atlocal
260 tests/CodeChecks/Makefile])
261
262AC_CONFIG_TESTDIR(tests/Fragmentations)
263AC_CONFIG_FILES([
264 tests/Fragmentations/atlocal
265 tests/Fragmentations/Makefile])
266AC_CONFIG_FILES([tests/Fragmentations/analyzer], [chmod +x tests/Fragmentations/analyzer])
267AC_CONFIG_FILES([tests/Fragmentations/joiner], [chmod +x tests/Fragmentations/joiner])
268AC_CONFIG_FILES([tests/Fragmentations/molecuilder], [chmod +x tests/Fragmentations/molecuilder])
269
270AC_CONFIG_TESTDIR(tests/regression)
271AC_CONFIG_FILES([
272 tests/regression/atlocal
273 tests/regression/Makefile])
274AC_CONFIG_FILES([tests/regression/molecuilder], [chmod +x tests/regression/molecuilder])
275
276AC_CONFIG_TESTDIR(tests/Tesselations)
277AC_CONFIG_FILES([
278 tests/Tesselations/atlocal
279 tests/Tesselations/Makefile])
280AC_CONFIG_FILES([tests/Tesselations/molecuilder], [chmod +x tests/Tesselations/molecuilder])
281
282AC_CONFIG_FILES([
283 doc/molecuilder.xml])
284AC_CONFIG_FILES([
285 MoleCuilder.pc:MoleCuilder.pc.in])
286AC_CONFIG_FILES([
287 Makefile
288 doc/Makefile
289 src/Makefile
290 utils/Makefile
291])
292AC_CONFIG_FILES([
293 src/unittests/Makefile
294])
295# produce python scripts and tests only when python's present
296AM_COND_IF([CONDPYTHON],[
297 AC_CONFIG_TESTDIR([tests/Python])
298 AC_CONFIG_FILES([utils/boxmaker.py:utils/boxmaker.py.in], [chmod +x utils/boxmaker.py])
299 AC_CONFIG_FILES([utils/python_wrapper:utils/python_wrapper.in], [chmod +x utils/python_wrapper])
300 AC_CONFIG_FILES([tests/Python/run], [chmod +x tests/Python/run])
301 AC_CONFIG_FILES([tests/Python/atlocal])
302 AC_CONFIG_FILES([tests/Python/Makefile])
303])
304AC_OUTPUT
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