source: ThirdParty/mpqc_open/src/lib/util/container/bitarray.h@ 398fcd

Action_Thermostats Add_AtomRandomPerturbation Add_RotateAroundBondAction Add_SelectAtomByNameAction Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_StructOpt_integration_tests AutomationFragmentation_failures Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_ChronosMutex Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion GeometryObjects Gui_displays_atomic_force_velocity IndependentFragmentGrids_IntegrationTest JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks RotateToPrincipalAxisSystem_UndoRedo StoppableMakroAction Subpackage_levmar Subpackage_vmg ThirdParty_MPQC_rebuilt_buildsystem TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps Ubuntu_1604_changes stable
Last change on this file since 398fcd was 860145, checked in by Frederik Heber <heber@…>, 8 years ago

Merge commit '0b990dfaa8c6007a996d030163a25f7f5fc8a7e7' as 'ThirdParty/mpqc_open'

  • Property mode set to 100644
File size: 3.5 KB
Line 
1//
2// bitarray.h
3//
4// Modifications are
5// Copyright (C) 1996 Limit Point Systems, Inc.
6//
7// Author: Edward Seidl <seidl@janed.com>
8// Maintainer: LPS
9//
10// This file is part of the SC Toolkit.
11//
12// The SC Toolkit is free software; you can redistribute it and/or modify
13// it under the terms of the GNU Library General Public License as published by
14// the Free Software Foundation; either version 2, or (at your option)
15// any later version.
16//
17// The SC Toolkit is distributed in the hope that it will be useful,
18// but WITHOUT ANY WARRANTY; without even the implied warranty of
19// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
20// GNU Library General Public License for more details.
21//
22// You should have received a copy of the GNU Library General Public License
23// along with the SC Toolkit; see the file COPYING.LIB. If not, write to
24// the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA.
25//
26// The U.S. Government is granted a limited license as per AL 91-7.
27//
28
29/* bitarray.h -- definition of the BitArray Class
30 *
31 * THIS SOFTWARE FITS THE DESCRIPTION IN THE U.S. COPYRIGHT ACT OF A
32 * "UNITED STATES GOVERNMENT WORK". IT WAS WRITTEN AS A PART OF THE
33 * AUTHOR'S OFFICIAL DUTIES AS A GOVERNMENT EMPLOYEE. THIS MEANS IT
34 * CANNOT BE COPYRIGHTED. THIS SOFTWARE IS FREELY AVAILABLE TO THE
35 * PUBLIC FOR USE WITHOUT A COPYRIGHT NOTICE, AND THERE ARE NO
36 * RESTRICTIONS ON ITS USE, NOW OR SUBSEQUENTLY.
37 *
38 * Author:
39 * E. T. Seidl
40 * Bldg. 12A, Rm. 2033
41 * Computer Systems Laboratory
42 * Division of Computer Research and Technology
43 * National Institutes of Health
44 * Bethesda, Maryland 20892
45 * Internet: seidl@alw.nih.gov
46 * July, 1993
47 */
48
49#ifndef _util_container_bitarray_h
50#define _util_container_bitarray_h
51
52#include <string.h>
53#include <stdlib.h>
54
55#include <util/misc/formio.h>
56
57namespace sc {
58
59//
60// class BitArrayLTri is used as the lower triangle of a boolean matrix.
61// rather than storing an int or a char, just use one bit for each, so
62// instead of n(n+1)/2 bytes of storage you have n(n+1)/16 bytes. A
63// further savings of n bits could be obtained by setting the diagonal to
64// always true or always false depending on the application, but this would
65// probably be more expensive computationally than it's worth.
66//
67
68class BitArrayLTri {
69 private:
70 unsigned char *a;
71 int n;
72 int nm;
73 int na;
74
75 static int
76 ij_offset(int i, int j)
77 {
78 return (i>j) ? (((i*(i+1)) >> 1) + j) : (((j*(j+1)) >> 1) + i);
79 }
80
81 public:
82 BitArrayLTri(int =0, int =0);
83 ~BitArrayLTri();
84
85 void set(unsigned int i) { a[(i>>3)] |= (1 << (i&7)); }
86 void set(unsigned int i, unsigned int j) { set(ij_offset(i,j)); }
87
88 int is_set(unsigned int i, unsigned int j) const
89 { int ij = ij_offset(i,j); return (a[(ij>>3)] & (1 << (ij&7))); }
90 int is_set(unsigned int i) const
91 { return (a[(i>>3)] & (1 << (i&7))); }
92
93 int operator()(unsigned int i, unsigned int j) const
94 { int ij = ij_offset(i,j); return (a[(ij>>3)] & (1 << (ij&7))); }
95 int operator()(unsigned int i) const
96 { return (a[(i>>3)] & (1 << (i&7))); }
97 int operator[](unsigned int i) const
98 { return (a[(i>>3)] & (1 << (i&7))); }
99
100 int dim() const { return na; }
101 int nrow() const { return nm; }
102 int ncol() const { return nm; }
103
104 int degree(unsigned int i) const {
105 int nedge=0;
106 for (int j=0; j < nm; j++) if ((*this)(i,j)) nedge++;
107 return nedge;
108 }
109};
110
111}
112
113#endif
114
115// Local Variables:
116// mode: c++
117// c-file-style: "ETS"
118// End:
Note: See TracBrowser for help on using the repository browser.