1 | //
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2 | // distsymm.cc
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3 | //
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4 | // Copyright (C) 1996 Limit Point Systems, Inc.
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5 | //
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6 | // Author: Curtis Janssen <cljanss@limitpt.com>
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7 | // Maintainer: LPS
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8 | //
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9 | // This file is part of the SC Toolkit.
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10 | //
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11 | // The SC Toolkit is free software; you can redistribute it and/or modify
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12 | // it under the terms of the GNU Library General Public License as published by
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13 | // the Free Software Foundation; either version 2, or (at your option)
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14 | // any later version.
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15 | //
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16 | // The SC Toolkit is distributed in the hope that it will be useful,
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17 | // but WITHOUT ANY WARRANTY; without even the implied warranty of
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18 | // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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19 | // GNU Library General Public License for more details.
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20 | //
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21 | // You should have received a copy of the GNU Library General Public License
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22 | // along with the SC Toolkit; see the file COPYING.LIB. If not, write to
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23 | // the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA.
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24 | //
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25 | // The U.S. Government is granted a limited license as per AL 91-7.
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26 | //
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27 |
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28 | #include <iostream>
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29 | #include <math.h>
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30 |
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31 | #include <util/misc/formio.h>
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32 | #include <util/keyval/keyval.h>
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33 | #include <math/scmat/dist.h>
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34 | #include <math/scmat/cmatrix.h>
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35 | #include <math/scmat/elemop.h>
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36 | #include <math/scmat/disthql.h>
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37 |
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38 | using namespace std;
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39 | using namespace sc;
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40 |
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41 | extern "C" { int DBmalloc_chain_check(const char *, int, int); }
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42 |
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43 | /////////////////////////////////////////////////////////////////////////////
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44 | // DistSymmSCMatrix member functions
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45 |
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46 | static ClassDesc DistSymmSCMatrix_cd(
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47 | typeid(DistSymmSCMatrix),"DistSymmSCMatrix",1,"public SymmSCMatrix",
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48 | 0, 0, 0);
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49 |
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50 | DistSymmSCMatrix::DistSymmSCMatrix(const RefSCDimension&a,DistSCMatrixKit*k):
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51 | SymmSCMatrix(a,k)
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52 | {
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53 | init_blocklist();
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54 | }
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55 |
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56 | int
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57 | DistSymmSCMatrix::block_to_node(int i, int j) const
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58 | {
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59 | if (j>i) {
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60 | ExEnv::errn() << indent << "DistSymmSCMatrix::block_to_node: j>i" << endl;
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61 | abort();
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62 | }
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63 |
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64 | return ((i*(i+1))/2 + j)%messagegrp()->n();
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65 | }
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66 |
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67 | Ref<SCMatrixBlock>
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68 | DistSymmSCMatrix::block_to_block(int i, int j) const
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69 | {
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70 | if (j>i) {
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71 | ExEnv::errn() << indent << "DistSymmSCMatrix::block_to_block: j>i" << endl;
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72 | abort();
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73 | }
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74 |
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75 | int offset = (i*(i+1))/2 + j;
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76 | int nproc = messagegrp()->n();
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77 |
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78 | if ((offset%nproc) != messagegrp()->me()) return 0;
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79 |
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80 | SCMatrixBlockListIter I;
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81 | for (I=blocklist->begin(); I!=blocklist->end(); I++) {
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82 | if (I.block()->blocki == i && I.block()->blockj == j)
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83 | return I.block();
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84 | }
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85 |
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86 | ExEnv::errn() << indent << "DistSymmSCMatrix::block_to_block: internal error" << endl;
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87 | abort();
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88 | return 0;
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89 | }
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90 |
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91 | double *
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92 | DistSymmSCMatrix::find_element(int i, int j) const
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93 | {
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94 | if (j>i) {
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95 | int tmp = i; i=j; j=tmp;
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96 | }
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97 |
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98 | int bi, oi;
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99 | d->blocks()->elem_to_block(i, bi, oi);
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100 |
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101 | int bj, oj;
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102 | d->blocks()->elem_to_block(j, bj, oj);
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103 |
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104 | Ref<SCMatrixBlock> ablk = block_to_block(bi, bj);
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105 | if (ablk.nonnull()) {
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106 | if (bi != bj) {
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107 | Ref<SCMatrixRectBlock> blk
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108 | = dynamic_cast<SCMatrixRectBlock*>(ablk.pointer());
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109 | if (blk.null()) return 0;
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110 | return &blk->data[oi*(blk->jend-blk->jstart)+oj];
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111 | }
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112 | else {
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113 | Ref<SCMatrixLTriBlock> blk
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114 | = dynamic_cast<SCMatrixLTriBlock*>(ablk.pointer());
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115 | if (blk.null()) return 0;
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116 | return &blk->data[(oi*(oi+1))/2+oj];
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117 | }
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118 | }
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119 | return 0;
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120 | }
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121 |
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122 | int
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123 | DistSymmSCMatrix::element_to_node(int i, int j) const
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124 | {
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125 | if (j>i) {
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126 | int tmp = i; i=j; j=tmp;
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127 | }
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128 |
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129 | int bi, oi;
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130 | d->blocks()->elem_to_block(i, bi, oi);
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131 |
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132 | int bj, oj;
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133 | d->blocks()->elem_to_block(j, bj, oj);
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134 |
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135 | return block_to_node(bi,bj);
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136 | }
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137 |
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138 | void
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139 | DistSymmSCMatrix::init_blocklist()
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140 | {
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141 | int i, j, index;
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142 | int nproc = messagegrp()->n();
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143 | int me = messagegrp()->me();
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144 | SCMatrixBlock *b;
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145 | blocklist = new SCMatrixBlockList;
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146 | for (i=0, index=0; i<d->blocks()->nblock(); i++) {
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147 | for (j=0; j<i; j++, index++) {
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148 | if (index%nproc != me) continue;
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149 | b = new SCMatrixRectBlock(d->blocks()->start(i),
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150 | d->blocks()->fence(i),
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151 | d->blocks()->start(j),
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152 | d->blocks()->fence(j));
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153 | b->blocki = i;
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154 | b->blockj = j;
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155 | blocklist->insert(b);
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156 | }
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157 | if (index%nproc == me) {
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158 | b = new SCMatrixLTriBlock(d->blocks()->start(i),
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159 | d->blocks()->fence(i));
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160 | b->blocki = i;
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161 | b->blockj = i;
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162 | blocklist->insert(b);
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163 | }
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164 | index++;
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165 | }
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166 | }
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167 |
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168 | DistSymmSCMatrix::~DistSymmSCMatrix()
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169 | {
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170 | }
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171 |
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172 | double
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173 | DistSymmSCMatrix::get_element(int i,int j) const
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174 | {
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175 | double res;
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176 | double *e = find_element(i,j);
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177 | if (e) {
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178 | res = *e;
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179 | messagegrp()->bcast(res, messagegrp()->me());
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180 | }
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181 | else {
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182 | messagegrp()->bcast(res, element_to_node(i, j));
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183 | }
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184 | return res;
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185 | }
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186 |
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187 | void
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188 | DistSymmSCMatrix::set_element(int i,int j,double a)
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189 | {
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190 | double *e = find_element(i,j);
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191 | if (e) {
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192 | *e = a;
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193 | }
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194 | }
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195 |
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196 | void
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197 | DistSymmSCMatrix::accumulate_element(int i,int j,double a)
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198 | {
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199 | double *e = find_element(i,j);
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200 | if (e) {
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201 | *e += a;
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202 | }
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203 | }
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204 |
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205 | SymmSCMatrix *
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206 | DistSymmSCMatrix::get_subblock(int br, int er)
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207 | {
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208 | error("get_subblock");
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209 | return 0;
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210 | }
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211 |
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212 | SCMatrix *
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213 | DistSymmSCMatrix::get_subblock(int, int, int, int)
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214 | {
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215 | error("get_subblock");
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216 | return 0;
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217 | }
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218 |
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219 | void
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220 | DistSymmSCMatrix::assign_subblock(SCMatrix*sb, int br, int er, int bc, int ec)
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221 | {
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222 | error("assign_subblock");
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223 | }
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224 |
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225 | void
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226 | DistSymmSCMatrix::assign_subblock(SymmSCMatrix*sb, int br, int er)
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227 | {
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228 | error("accumulate_subblock");
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229 | }
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230 |
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231 | void
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232 | DistSymmSCMatrix::accumulate_subblock(SCMatrix*sb, int br, int er, int bc, int ec)
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233 | {
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234 | error("accumulate_subblock");
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235 | }
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236 |
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237 | void
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238 | DistSymmSCMatrix::accumulate_subblock(SymmSCMatrix*sb, int br, int er)
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239 | {
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240 | error("accumulate_subblock");
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241 | }
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242 |
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243 | SCVector *
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244 | DistSymmSCMatrix::get_row(int i)
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245 | {
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246 | error("get_row");
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247 | return 0;
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248 | }
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249 |
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250 | void
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251 | DistSymmSCMatrix::assign_row(SCVector *v, int i)
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252 | {
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253 | error("assign_row");
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254 | }
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255 |
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256 | void
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257 | DistSymmSCMatrix::accumulate_row(SCVector *v, int i)
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258 | {
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259 | error("accumulate_row");
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260 | }
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261 |
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262 | void
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263 | DistSymmSCMatrix::accumulate(const SymmSCMatrix*a)
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264 | {
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265 | // make sure that the arguments is of the correct type
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266 | const DistSymmSCMatrix* la
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267 | = require_dynamic_cast<const DistSymmSCMatrix*>(a,"DistSymmSCMatrix::accumulate");
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268 |
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269 | // make sure that the dimensions match
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270 | if (!dim()->equiv(la->dim())) {
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271 | ExEnv::errn() << indent << "DistSymmSCMatrix::accumulate(SCMatrix*a): "
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272 | << "dimensions don't match\n";
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273 | abort();
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274 | }
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275 |
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276 | SCMatrixBlockListIter i1, i2;
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277 | for (i1=la->blocklist->begin(),i2=blocklist->begin();
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278 | i1!=la->blocklist->end() && i2!=blocklist->end();
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279 | i1++,i2++) {
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280 | int n = i1.block()->ndat();
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281 | if (n != i2.block()->ndat()) {
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282 | ExEnv::errn() << indent
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283 | << "DistSymmSCMatrixListSubblockIter::accumulate block "
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284 | << "mismatch: internal error" << endl;
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285 | abort();
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286 | }
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287 | double *dat1 = i1.block()->dat();
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288 | double *dat2 = i2.block()->dat();
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289 | for (int i=0; i<n; i++) {
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290 | dat2[i] += dat1[i];
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291 | }
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292 | }
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293 | }
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294 |
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295 | double
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296 | DistSymmSCMatrix::invert_this()
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297 | {
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298 | RefDiagSCMatrix refa = kit()->diagmatrix(d);
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299 | RefSCMatrix refb = kit()->matrix(d,d);
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300 | diagonalize(refa.pointer(),refb.pointer());
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301 | double determ = 1.0;
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302 | for (int i=0; i<dim()->n(); i++) {
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303 | double val = refa->get_element(i);
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304 | determ *= val;
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305 | }
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306 | Ref<SCElementOp> op = new SCElementInvert(1.0e-12);
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307 | refa->element_op(op.pointer());
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308 | assign(0.0);
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309 | accumulate_transform(refb.pointer(), refa.pointer());
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310 | return determ;
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311 | }
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312 |
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313 | double
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314 | DistSymmSCMatrix::determ_this()
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315 | {
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316 | return invert_this();
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317 | }
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318 |
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319 | double
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320 | DistSymmSCMatrix::trace()
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321 | {
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322 | double ret=0.0;
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323 | Ref<SCMatrixSubblockIter> I = local_blocks(SCMatrixSubblockIter::Read);
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324 | for (I->begin(); I->ready(); I->next()) {
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325 | Ref<SCMatrixLTriBlock> b = dynamic_cast<SCMatrixLTriBlock*>(I->block());
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326 | if (b.nonnull() && b->blocki == b->blockj) {
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327 | int ni = b->end-b->start;
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328 | double *data = b->data;
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329 | for (int i=0; i<ni; i++) {
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330 | data += i;
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331 | ret += *data;
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332 | }
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333 | }
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334 | }
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335 | messagegrp()->sum(ret);
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336 |
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337 | return ret;
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338 | }
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339 |
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340 | double
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341 | DistSymmSCMatrix::solve_this(SCVector*v)
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342 | {
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343 | DistSCVector* lv =
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344 | require_dynamic_cast<DistSCVector*>(v,"DistSymmSCMatrix::solve_this");
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345 |
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346 | // make sure that the dimensions match
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347 | if (!dim()->equiv(lv->dim())) {
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348 | ExEnv::errn() << indent << "DistSymmSCMatrix::solve_this(SCVector*v): "
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349 | << "dimensions don't match\n";
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350 | abort();
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351 | }
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352 |
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353 | error("no solve this");
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354 |
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355 | return 0.0;
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356 | }
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357 |
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358 | void
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359 | DistSymmSCMatrix::gen_invert_this()
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360 | {
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361 | invert_this();
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362 | }
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363 |
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364 | void
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365 | DistSymmSCMatrix::diagonalize(DiagSCMatrix*a,SCMatrix*b)
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366 | {
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367 | const char* name = "DistSymmSCMatrix::diagonalize";
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368 | // make sure that the argument are of the correct type
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369 | require_dynamic_cast<DistDiagSCMatrix*>(a,name);
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370 | DistSCMatrix* lb = require_dynamic_cast<DistSCMatrix*>(b,name);
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371 |
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372 | int n = dim()->n();
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373 | int me = messagegrp()->me();
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374 | int nproc = messagegrp()->n();
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375 |
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376 | RefSCMatrix arect = kit()->matrix(dim(),dim());
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377 | DistSCMatrix *rect = dynamic_cast<DistSCMatrix*>(arect.pointer());
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378 | rect->assign(0.0);
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379 | rect->accumulate(this);
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380 |
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381 | // This sets up the index list of columns to be stored on this node
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382 | int nvec = n/nproc + (me<(n%nproc)?1:0);
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383 | int *ivec = new int[nvec];
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384 | for (int i=0; i<nvec; i++) {
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385 | ivec[i] = i*nproc + me;
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386 | }
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387 |
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388 | rect->create_vecform(DistSCMatrix::Col,nvec);
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389 | rect->vecform_op(DistSCMatrix::CopyToVec,ivec);
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390 | lb->create_vecform(DistSCMatrix::Col,nvec);
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391 |
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392 | double *d = new double[n];
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393 | dist_diagonalize(n, rect->nvec, rect->vec[0], d, lb->vec[0],
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394 | messagegrp());
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395 |
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396 | // put d into the diagonal matrix
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397 | a->assign(d);
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398 |
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399 | lb->vecform_op(DistSCMatrix::CopyFromVec, ivec);
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400 | lb->delete_vecform();
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401 | rect->delete_vecform();
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402 | arect = 0;
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403 | delete[] ivec;
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404 | }
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405 |
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406 | // computes this += a + a.t
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407 | void
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408 | DistSymmSCMatrix::accumulate_symmetric_sum(SCMatrix*a)
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409 | {
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410 | // make sure that the argument is of the correct type
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411 | DistSCMatrix* la
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412 | = require_dynamic_cast<DistSCMatrix*>(a,"DistSymmSCMatrix::"
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413 | "accumulate_symmetric_sum");
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414 |
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415 | if (!dim()->equiv(la->rowdim()) || !dim()->equiv(la->coldim())) {
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416 | ExEnv::errn() << indent << "DistSymmSCMatrix::"
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417 | << "accumulate_symmetric_sum(SCMatrix*a): bad dim\n";
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418 | abort();
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419 | }
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420 |
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421 | Ref<SCMatrixSubblockIter> I = all_blocks(SCMatrixSubblockIter::Accum);
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422 | for (I->begin(); I->ready(); I->next()) {
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423 | Ref<SCMatrixBlock> block = I->block();
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424 | // see if i've got this block
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425 | Ref<SCMatrixBlock> localblock
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426 | = la->block_to_block(block->blocki,block->blockj);
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427 | if (localblock.nonnull()) {
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428 | // the diagonal blocks require special handling
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429 | if (block->blocki == block->blockj) {
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430 | int n = la->rowblocks()->size(block->blocki);
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431 | double *dat1 = block->dat();
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432 | double *dat2 = localblock->dat();
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433 | for (int i=0; i<n; i++) {
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434 | for (int j=0; j<=i; j++) {
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435 | double tmp = 0.0;
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436 | tmp += dat2[i*n+j];
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437 | tmp += dat2[j*n+i];
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438 | *dat1 += tmp;
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439 | dat1++;
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440 | }
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441 | }
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442 | }
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443 | else {
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444 | int n = block->ndat();
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445 | double *dat1 = block->dat();
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446 | double *dat2 = localblock->dat();
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447 | for (int i=0; i<n; i++) {
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448 | dat1[i] += dat2[i];
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449 | }
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450 | }
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451 | }
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452 | // now for the transpose
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453 | if (block->blocki != block->blockj) {
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454 | localblock = la->block_to_block(block->blockj,block->blocki);
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455 | if (localblock.nonnull()) {
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456 | int nr = la->rowblocks()->size(block->blocki);
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457 | int nc = la->rowblocks()->size(block->blockj);
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458 | double *dat1 = block->dat();
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459 | double *dat2 = localblock->dat();
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460 | for (int i=0; i<nr; i++) {
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461 | for (int j=0; j<nc; j++) {
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462 | *dat1++ += dat2[j*nr+i];
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463 | }
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464 | }
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465 | }
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466 | }
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467 | }
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468 | }
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469 |
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470 | void
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471 | DistSymmSCMatrix::element_op(const Ref<SCElementOp>& op)
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472 | {
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473 | SCMatrixBlockListIter i;
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474 | for (i = blocklist->begin(); i != blocklist->end(); i++) {
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475 | op->process_base(i.block());
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476 | }
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477 | if (op->has_collect()) op->collect(messagegrp());
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478 | }
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479 |
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480 | void
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481 | DistSymmSCMatrix::element_op(const Ref<SCElementOp2>& op,
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482 | SymmSCMatrix* m)
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483 | {
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484 | DistSymmSCMatrix *lm
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485 | = require_dynamic_cast<DistSymmSCMatrix*>(m,"DistSymSCMatrix::element_op");
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486 |
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487 | if (!dim()->equiv(lm->dim())) {
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488 | ExEnv::errn() << indent << "DistSymmSCMatrix: bad element_op\n";
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489 | abort();
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490 | }
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491 | SCMatrixBlockListIter i, j;
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492 | for (i = blocklist->begin(), j = lm->blocklist->begin();
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493 | i != blocklist->end();
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494 | i++, j++) {
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495 | op->process_base(i.block(), j.block());
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496 | }
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497 | if (op->has_collect()) op->collect(messagegrp());
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498 | }
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499 |
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500 | void
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501 | DistSymmSCMatrix::element_op(const Ref<SCElementOp3>& op,
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502 | SymmSCMatrix* m,SymmSCMatrix* n)
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503 | {
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504 | DistSymmSCMatrix *lm
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505 | = require_dynamic_cast<DistSymmSCMatrix*>(m,"DistSymSCMatrix::element_op");
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506 | DistSymmSCMatrix *ln
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507 | = require_dynamic_cast<DistSymmSCMatrix*>(n,"DistSymSCMatrix::element_op");
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508 |
|
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509 | if (!dim()->equiv(lm->dim()) || !dim()->equiv(ln->dim())) {
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510 | ExEnv::errn() << indent << "DistSymmSCMatrix: bad element_op\n";
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511 | abort();
|
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512 | }
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513 | SCMatrixBlockListIter i, j, k;
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514 | for (i = blocklist->begin(),
|
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515 | j = lm->blocklist->begin(),
|
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516 | k = ln->blocklist->begin();
|
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517 | i != blocklist->end();
|
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518 | i++, j++, k++) {
|
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519 | op->process_base(i.block(), j.block(), k.block());
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520 | }
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521 | if (op->has_collect()) op->collect(messagegrp());
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522 | }
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523 |
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524 | Ref<SCMatrixSubblockIter>
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525 | DistSymmSCMatrix::local_blocks(SCMatrixSubblockIter::Access access)
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526 | {
|
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527 | return new SCMatrixListSubblockIter(access, blocklist);
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528 | }
|
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529 |
|
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530 | Ref<SCMatrixSubblockIter>
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531 | DistSymmSCMatrix::all_blocks(SCMatrixSubblockIter::Access access)
|
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532 | {
|
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533 | return new DistSCMatrixListSubblockIter(access, blocklist, messagegrp());
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534 | }
|
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535 |
|
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536 | void
|
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537 | DistSymmSCMatrix::error(const char *msg)
|
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538 | {
|
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539 | ExEnv::errn() << "DistSymmSCMatrix: error: " << msg << endl;
|
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540 | }
|
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541 |
|
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542 | Ref<DistSCMatrixKit>
|
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543 | DistSymmSCMatrix::skit()
|
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544 | {
|
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545 | return dynamic_cast<DistSCMatrixKit*>(kit().pointer());
|
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546 | }
|
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547 |
|
---|
548 | void
|
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549 | DistSymmSCMatrix::convert_accumulate(SymmSCMatrix*a)
|
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550 | {
|
---|
551 | SymmSCMatrix::convert_accumulate(a);
|
---|
552 |
|
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553 | #if 0
|
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554 | DistSymmSCMatrix *d = require_dynamic_cast<DistSymmSCMatrix*>(a,
|
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555 | "DistSymmSCMatrix::convert_accumulate");
|
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556 |
|
---|
557 | SCMatrixBlockListIter i, j;
|
---|
558 | for (i = blocklist->begin(), j = d->blocklist->begin();
|
---|
559 | i != blocklist->end();
|
---|
560 | i++, j++) {
|
---|
561 | }
|
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562 | #endif
|
---|
563 | }
|
---|
564 |
|
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565 | /////////////////////////////////////////////////////////////////////////////
|
---|
566 |
|
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567 | // Local Variables:
|
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568 | // mode: c++
|
---|
569 | // c-file-style: "CLJ"
|
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570 | // End:
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