1 | //
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2 | // wfn.h
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3 | //
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4 | // Copyright (C) 1996 Limit Point Systems, Inc.
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5 | //
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6 | // Author: Curtis Janssen <cljanss@limitpt.com>
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7 | // Maintainer: LPS
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8 | //
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9 | // This file is part of the SC Toolkit.
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10 | //
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11 | // The SC Toolkit is free software; you can redistribute it and/or modify
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12 | // it under the terms of the GNU Library General Public License as published by
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13 | // the Free Software Foundation; either version 2, or (at your option)
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14 | // any later version.
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15 | //
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16 | // The SC Toolkit is distributed in the hope that it will be useful,
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17 | // but WITHOUT ANY WARRANTY; without even the implied warranty of
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18 | // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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19 | // GNU Library General Public License for more details.
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20 | //
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21 | // You should have received a copy of the GNU Library General Public License
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22 | // along with the SC Toolkit; see the file COPYING.LIB. If not, write to
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23 | // the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA.
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24 | //
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25 | // The U.S. Government is granted a limited license as per AL 91-7.
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26 | //
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27 |
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28 | #ifndef _chemistry_qc_wfn_wfn_h
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29 | #define _chemistry_qc_wfn_wfn_h
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30 |
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31 | #ifdef __GNUC__
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32 | #pragma interface
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33 | #endif
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34 |
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35 | #include <iostream>
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36 |
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37 | #include <util/misc/compute.h>
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38 | #include <math/scmat/matrix.h>
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39 | #include <math/scmat/vector3.h>
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40 | #include <chemistry/molecule/energy.h>
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41 | #include <chemistry/qc/basis/basis.h>
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42 | #include <chemistry/qc/basis/integral.h>
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43 | #include <chemistry/qc/basis/orthog.h>
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44 |
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45 | namespace sc {
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46 |
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47 | /** A Wavefunction is a MolecularEnergy that utilizies a GaussianBasisSet. */
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48 | class Wavefunction: public MolecularEnergy {
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49 |
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50 | RefSCDimension aodim_;
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51 | RefSCDimension sodim_;
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52 | Ref<SCMatrixKit> basiskit_;
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53 |
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54 | ResultRefSymmSCMatrix overlap_;
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55 | ResultRefSymmSCMatrix hcore_;
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56 | ResultRefSCMatrix natural_orbitals_;
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57 | ResultRefDiagSCMatrix natural_density_;
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58 |
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59 | double * bs_values;
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60 | double * bsg_values;
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61 |
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62 | Ref<GaussianBasisSet> gbs_;
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63 | Ref<Integral> integral_;
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64 |
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65 | Ref<GaussianBasisSet> atom_basis_;
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66 | double * atom_basis_coef_;
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67 |
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68 | double lindep_tol_;
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69 | OverlapOrthog::OrthogMethod orthog_method_;
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70 | Ref<OverlapOrthog> orthog_;
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71 |
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72 | int print_nao_;
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73 | int print_npa_;
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74 |
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75 | void init_orthog();
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76 |
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77 | void set_up_charge_types(std::vector<int> &q_pc,
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78 | std::vector<int> &q_cd,
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79 | std::vector<int> &n_pc,
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80 | std::vector<int> &n_cd);
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81 |
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82 | double nuc_rep_pc_pc(const std::vector<int>&,const std::vector<int>&,bool);
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83 | double nuc_rep_pc_cd(const std::vector<int>&,const std::vector<int>&);
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84 | double nuc_rep_cd_cd(const std::vector<int>&,const std::vector<int>&,bool);
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85 | void scale_atom_basis_coef();
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86 |
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87 | void nuc_rep_grad_pc_pc(double **grad,
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88 | const std::vector<int>&c1,
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89 | const std::vector<int>&c2,
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90 | bool uniq);
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91 | void nuc_rep_grad_pc_cd(double **grad,
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92 | const std::vector<int>&c1,
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93 | const std::vector<int>&c2);
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94 | void nuc_rep_grad_cd_cd(double **grad,
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95 | const std::vector<int>&c1,
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96 | const std::vector<int>&c2,
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97 | bool uniq);
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98 |
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99 | protected:
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100 |
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101 | int debug_;
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102 |
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103 | double min_orthog_res();
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104 | double max_orthog_res();
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105 |
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106 | void copy_orthog_info(const Ref<Wavefunction> &);
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107 |
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108 | public:
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109 | Wavefunction(StateIn&);
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110 | /** The KeyVal constructor.
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111 |
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112 | <dl>
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113 |
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114 | <dt><tt>basis</tt><dd> Specifies a GaussianBasisSet object. There
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115 | is no default.
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116 |
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117 | <dt><tt>integral</tt><dd> Specifies an Integral object that
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118 | computes the two electron integrals. The default is a IntegralV3
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119 | object.
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120 |
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121 | <dt><tt>orthog_method</tt><dd> This is a string that specifies the
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122 | orthogonalization method to be used. It can be one one canonical,
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123 | gramschmidt, or symmetric. The default is symmetric.
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124 |
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125 | <dt><tt>lindep_tol</tt><dd> The tolerance used to detect linearly
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126 | dependent basis functions. The precise meaning depends on the
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127 | orthogonalization method. The default value is 1e-8.
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128 |
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129 | <dt><tt>print_nao</tt><dd> This specifies a boolean value. If true
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130 | the natural atomic orbitals will be printed. Not all wavefunction
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131 | will be able to do this. The default is false.
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132 |
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133 | <dt><tt>print_npa</tt><dd> This specifies a boolean value. If true
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134 | the natural population analysis will be printed. Not all
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135 | wavefunction will be able to do this. The default is true if
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136 | print_nao is true, otherwise it is false.
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137 |
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138 | <dt><tt>debug</tt><dd> This integer can be used to produce output
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139 | for debugging. The default is 0.
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140 |
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141 | </dl> */
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142 | Wavefunction(const Ref<KeyVal>&);
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143 | virtual ~Wavefunction();
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144 |
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145 | void save_data_state(StateOut&);
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146 |
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147 | double density(const SCVector3&);
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148 | double density_gradient(const SCVector3&,double*);
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149 | double natural_orbital(const SCVector3& r, int iorb);
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150 | double natural_orbital_density(const SCVector3& r,
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151 | int orb, double* orbval = 0);
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152 | double orbital(const SCVector3& r, int iorb, const RefSCMatrix& orbs);
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153 |
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154 | double orbital_density(const SCVector3& r,
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155 | int iorb,
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156 | const RefSCMatrix& orbs,
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157 | double* orbval = 0);
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158 |
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159 | /// Returns the charge.
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160 | double charge();
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161 | /// Returns the number of electrons.
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162 | virtual int nelectron() = 0;
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163 |
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164 | /// Returns the SO density.
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165 | virtual RefSymmSCMatrix density() = 0;
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166 | /// Returns the AO density.
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167 | virtual RefSymmSCMatrix ao_density();
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168 | /// Returns the natural orbitals.
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169 | virtual RefSCMatrix natural_orbitals();
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170 | /// Returns the natural density (a diagonal matrix).
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171 | virtual RefDiagSCMatrix natural_density();
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172 |
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173 | /// Return 1 if the alpha density is not equal to the beta density.
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174 | virtual int spin_polarized() = 0;
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175 |
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176 | /// Return alpha electron densities in the SO basis.
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177 | virtual RefSymmSCMatrix alpha_density();
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178 | /// Return beta electron densities in the SO basis.
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179 | virtual RefSymmSCMatrix beta_density();
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180 | /// Return alpha electron densities in the AO basis.
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181 | virtual RefSymmSCMatrix alpha_ao_density();
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182 | /// Return beta electron densities in the AO basis.
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183 | virtual RefSymmSCMatrix beta_ao_density();
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184 |
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185 | /// returns the ao to nao transformation matrix
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186 | virtual RefSCMatrix nao(double *atom_charges=0);
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187 |
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188 | /// Returns the SO overlap matrix.
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189 | virtual RefSymmSCMatrix overlap();
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190 | /// Returns the SO core Hamiltonian.
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191 | virtual RefSymmSCMatrix core_hamiltonian();
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192 |
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193 | /** Returns the nuclear repulsion energy. This must be used instead of
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194 | Molecule::nuclear_repulsion_energy() since there may be diffuse
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195 | atomic charges. */
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196 | virtual double nuclear_repulsion_energy();
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197 | /** Computes the nuclear repulsion gradient. This must be used instead
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198 | of Molecule::nuclear_repulsion_1der() since there may be diffuse
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199 | atomic charges. The gradient, g, is zeroed and set to x_0, y_0,
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200 | z_0, x_1, ... . */
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201 | void nuclear_repulsion_energy_gradient(double *g);
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202 | /** Computes the nuclear repulsion gradient. This must be used instead
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203 | of Molecule::nuclear_repulsion_1der() since there may be diffuse
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204 | atomic charges. The gradient, g, is first zeroed. Its dimensions
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205 | are g[natom][3]. */
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206 | virtual void nuclear_repulsion_energy_gradient(double **g);
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207 |
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208 | /// Atomic orbital dimension.
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209 | RefSCDimension ao_dimension();
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210 | /// Symmetry adapted orbital dimension.
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211 | RefSCDimension so_dimension();
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212 | /// Orthogonalized symmetry adapted orbital dimension.
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213 | RefSCDimension oso_dimension();
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214 | /// Matrix kit for AO, SO, orthogonalized SO, and MO dimensioned matrices.
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215 | Ref<SCMatrixKit> basis_matrixkit();
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216 | /// Returns the Molecule.
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217 | Ref<Molecule> molecule() const;
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218 | /// Returns the basis set.
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219 | Ref<GaussianBasisSet> basis() const;
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220 | /// Returns the basis set describing the nuclear charge distributions
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221 | Ref<GaussianBasisSet> atom_basis() const;
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222 | /** Returns the coefficients of the nuclear charge distribution basis
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223 | * functions. */
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224 | const double *atom_basis_coef() const;
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225 | /// Returns the integral evaluator.
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226 | Ref<Integral> integral();
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227 |
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228 | // override symmetry_changed from MolecularEnergy
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229 | void symmetry_changed();
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230 |
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231 | /** Returns a matrix which does the default transform from SO's to
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232 | orthogonal SO's. This could be either the symmetric or canonical
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233 | orthogonalization matrix. The row dimension is SO and the column
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234 | dimension is ortho SO. An operator \f$O\f$ in the ortho SO basis is
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235 | given by \f$X O X^T\f$ where \f$X\f$ is the return value of this
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236 | function. */
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237 | RefSCMatrix so_to_orthog_so();
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238 |
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239 | /** Returns the inverse of the transformation returned by so_to_orthog_so.
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240 | */
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241 | RefSCMatrix so_to_orthog_so_inverse();
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242 |
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243 | /// Returns the orthogonalization method
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244 | OverlapOrthog::OrthogMethod orthog_method() const;
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245 | /// (Re)Sets the orthogonalization method and makes this obsolete
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246 | void set_orthog_method(const OverlapOrthog::OrthogMethod&);
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247 |
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248 | /// Returns the tolerance for linear dependencies.
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249 | double lindep_tol() const;
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250 | /// Re(Sets) the tolerance for linear dependencies.
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251 | void set_lindep_tol(double);
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252 |
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253 | void obsolete();
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254 |
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255 | void print(std::ostream& = ExEnv::out0()) const;
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256 | };
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257 |
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258 | }
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259 |
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260 | #endif
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261 |
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262 | // Local Variables:
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263 | // mode: c++
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264 | // c-file-style: "ETS"
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265 | // End:
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