Action_Thermostats
Add_AtomRandomPerturbation
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_StructOpt_integration_tests
AutomationFragmentation_failures
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_ChronosMutex
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
GeometryObjects
Gui_displays_atomic_force_velocity
IndependentFragmentGrids_IntegrationTest
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
RotateToPrincipalAxisSystem_UndoRedo
StoppableMakroAction
Subpackage_levmar
Subpackage_vmg
ThirdParty_MPQC_rebuilt_buildsystem
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
Ubuntu_1604_changes
stable
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1 |
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2 | #include <util/misc/formio.h>
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3 | #include <chemistry/qc/psi/psiwfn.h>
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4 | #include <math/optimize/opt.h>
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5 | #include <util/keyval/keyval.h>
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6 |
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7 | #include <chemistry/qc/psi/linkage.h>
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8 | #include <math/optimize/linkage.h>
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9 |
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10 | using namespace std;
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11 | using namespace sc;
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12 |
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13 | void die()
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14 | {
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15 | fprintf(stderr,"die\n");
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16 | abort();
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17 | }
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18 |
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19 | main(int argc, char**argv)
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20 | {
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21 |
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22 | set_new_handler(die);
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23 |
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24 | // the output stream is standard out
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25 | ostream& o = cout;
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26 |
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27 | ParsedKeyVal* pkv;
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28 | Ref<KeyVal> rpkv(pkv = new ParsedKeyVal());
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29 | pkv->read( SRCDIR "/psi.in");
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30 | pkv = 0; // should only use rpkv
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31 |
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32 | int i, do_grad = 1;
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33 |
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34 | for (i=0; rpkv->exists("mole",i); i++) {
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35 | Ref<MolecularEnergy> mole;
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36 | mole << rpkv->describedclassvalue("mole",i);
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37 | if (do_grad)
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38 | mole->do_gradient(1);
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39 | else
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40 | mole->do_gradient(0);
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41 |
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42 | if (mole.nonnull()) {
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43 | mole->print(o);
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44 |
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45 | o << "energy = " << mole->energy() << endl;
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46 | if (do_grad) {
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47 | o << "gradient:\n";
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48 | o << incindent; mole->gradient().print(o); o << decindent;
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49 | }
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50 | }
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51 | else {
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52 | o << "mole[" << i << "] is null\n";
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53 | }
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54 | }
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55 |
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56 | for (i=0; rpkv->exists("opt",i); i++) {
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57 | Ref<Optimize> opt;
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58 | opt << rpkv->describedclassvalue("opt",i);
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59 |
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60 | if (opt.nonnull()) {
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61 | //opt->print(o);
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62 |
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63 | opt->optimize();
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64 | }
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65 | else {
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66 | o << "opt[" << i << "] is null\n";
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67 | }
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68 | opt->function()->print();
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69 | }
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70 | }
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