[0b990d] | 1 | //
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| 2 | // transform_13inds.cc
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| 3 | //
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| 4 | // Copyright (C) 2001 Edward Valeev
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| 5 | //
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| 6 | // Author: Edward Valeev <edward.valeev@chemistry.gatech.edu>
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| 7 | // Maintainer: EV
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| 8 | //
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| 9 | // This file is part of the SC Toolkit.
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| 10 | //
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| 11 | // The SC Toolkit is free software; you can redistribute it and/or modify
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| 12 | // it under the terms of the GNU Library General Public License as published by
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| 13 | // the Free Software Foundation; either version 2, or (at your option)
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| 14 | // any later version.
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| 15 | //
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| 16 | // The SC Toolkit is distributed in the hope that it will be useful,
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| 17 | // but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 18 | // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 19 | // GNU Library General Public License for more details.
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| 20 | //
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| 21 | // You should have received a copy of the GNU Library General Public License
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| 22 | // along with the SC Toolkit; see the file COPYING.LIB. If not, write to
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| 23 | // the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA.
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| 24 | //
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| 25 | // The U.S. Government is granted a limited license as per AL 91-7.
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| 26 | //
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| 27 |
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| 28 | #ifdef __GNUC__
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| 29 | #pragma implementation
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| 30 | #endif
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| 31 |
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| 32 | #include <math.h>
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| 33 | #include <stdexcept>
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| 34 |
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| 35 | #include <util/misc/formio.h>
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| 36 | #include <util/misc/timer.h>
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| 37 | #include <chemistry/qc/basis/gpetite.h>
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| 38 | #include <chemistry/qc/mbpt/bzerofast.h>
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| 39 | #include <chemistry/qc/mbpt/util.h>
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| 40 | #include <chemistry/qc/basis/distshpair.h>
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| 41 | #include <chemistry/qc/mbptr12/blas.h>
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| 42 | #include <chemistry/qc/mbptr12/transform_13inds.h>
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| 43 |
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| 44 | using namespace std;
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| 45 | using namespace sc;
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| 46 |
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| 47 | #define PRINT1Q 0
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| 48 | #define PRINT2Q 0
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| 49 | #define PRINT_NUM_TE_TYPES 1
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| 50 |
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| 51 | // The FAST_BUT_WRONG flags is useful for exercising the communications
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| 52 | // layer. It causes the first and second quarter transformation to be
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| 53 | // omitted, but all communication is still performed. This permits
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| 54 | // problems in communications libraries to be more quickly identified.
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| 55 | #define FAST_BUT_WRONG 0
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| 56 |
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| 57 | TwoBodyMOIntsTransform_13Inds::TwoBodyMOIntsTransform_13Inds(
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| 58 | const Ref<TwoBodyMOIntsTransform>& tform, int mythread, int nthread,
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| 59 | const Ref<ThreadLock>& lock, const Ref<TwoBodyInt> &tbint, double tol, int debug) :
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| 60 | tform_(tform), mythread_(mythread), nthread_(nthread), lock_(lock), tbint_(tbint),
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| 61 | tol_(tol), debug_(debug)
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| 62 | {
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| 63 | timer_ = new RegionTimer();
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| 64 | aoint_computed_ = 0;
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| 65 | ni_ = tform_->batchsize();
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| 66 | i_offset_ = 0;
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| 67 | }
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| 68 |
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| 69 | TwoBodyMOIntsTransform_13Inds::~TwoBodyMOIntsTransform_13Inds()
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| 70 | {
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| 71 | timer_ = 0;
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| 72 | }
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| 73 |
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| 74 | /*
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| 75 | Distribute work by SR
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| 76 |
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| 77 | for all PQ
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| 78 | compute unique (PQ|RS)
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| 79 | transform to (IM|RS) stored as rsim where M are all AOs for basis set 2
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| 80 | end PQ
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| 81 |
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| 82 | transform (IM|RS) to (IM|JS) stored as ijsm and accumulate to the tasks that holds respective ij-pairs.
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| 83 |
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| 84 | end SR
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| 85 | */
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| 86 |
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| 87 | void
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| 88 | TwoBodyMOIntsTransform_13Inds::run()
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| 89 | {
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| 90 | Ref<MemoryGrp> mem = tform_->mem();
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| 91 | Ref<MessageGrp> msg = tform_->msg();
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| 92 | Ref<R12IntsAcc> ints_acc = tform_->ints_acc();
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| 93 | const int me = msg->me();
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| 94 | const int nproc = msg->n();
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| 95 | Ref<MOIndexSpace> space1 = tform_->space1();
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| 96 | Ref<MOIndexSpace> space2 = tform_->space2();
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| 97 | Ref<MOIndexSpace> space3 = tform_->space3();
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| 98 | Ref<MOIndexSpace> space4 = tform_->space4();
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| 99 |
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| 100 | Ref<GaussianBasisSet> bs1 = space1->basis();
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| 101 | Ref<GaussianBasisSet> bs2 = space2->basis();
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| 102 | Ref<GaussianBasisSet> bs3 = space3->basis();
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| 103 | Ref<GaussianBasisSet> bs4 = space4->basis();
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| 104 | const bool bs1_eq_bs2 = (bs1 == bs2);
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| 105 | const bool bs3_eq_bs4 = (bs3 == bs4);
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| 106 |
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| 107 | const bool dynamic = tform_->dynamic();
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| 108 | const double print_percent = tform_->print_percent();
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| 109 |
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| 110 | const int ni = ni_;
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| 111 | const int rank1 = space1->rank();
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| 112 | const int rank3 = space3->rank();
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| 113 | const int nfuncmax1 = bs1->max_nfunction_in_shell();
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| 114 | const int nfuncmax2 = bs2->max_nfunction_in_shell();
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| 115 | const int nfuncmax3 = bs3->max_nfunction_in_shell();
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| 116 | const int nfuncmax4 = bs4->max_nfunction_in_shell();
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| 117 | const int nsh1 = bs1->nshell();
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| 118 | const int nsh2 = bs2->nshell();
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| 119 | const int nsh3 = bs3->nshell();
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| 120 | const int nsh4 = bs4->nshell();
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| 121 | const int nbasis1 = bs1->nbasis();
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| 122 | const int nbasis2 = bs2->nbasis();
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| 123 | const int nbasis3 = bs3->nbasis();
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| 124 | const int nbasis4 = bs4->nbasis();
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| 125 | double dtol = pow(2.0,tol_);
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| 126 | const size_t memgrp_blksize = tform_->memgrp_blksize()/sizeof(double);
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| 127 |
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| 128 | double** vector1 = new double*[nbasis1];
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| 129 | double** vector3 = new double*[nbasis3];
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| 130 | vector1[0] = new double[rank1*nbasis1];
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| 131 | vector3[0] = new double[rank3*nbasis3];
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| 132 | for(int i=1; i<nbasis1; i++) vector1[i] = vector1[i-1] + rank1;
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| 133 | for(int i=1; i<nbasis3; i++) vector3[i] = vector3[i-1] + rank3;
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| 134 | space1->coefs().convert(vector1);
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| 135 | space3->coefs().convert(vector3);
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| 136 |
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| 137 | /*-------------------------------------------------------------
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| 138 | Find integrals buffers to 1/r12, r12, and [r12,T1] integrals
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| 139 | -------------------------------------------------------------*/
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| 140 | const int num_te_types = tform_->num_te_types();
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| 141 | const double *intbuf[TwoBodyInt::num_tbint_types];
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| 142 | intbuf[TwoBodyInt::eri] = tbint_->buffer(TwoBodyInt::eri);
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| 143 | intbuf[TwoBodyInt::r12] = tbint_->buffer(TwoBodyInt::r12);
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| 144 | intbuf[TwoBodyInt::r12t1] = tbint_->buffer(TwoBodyInt::r12t1);
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| 145 | intbuf[TwoBodyInt::r12t2] = tbint_->buffer(TwoBodyInt::r12t2);
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| 146 |
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| 147 | /*-----------------------------------------------------
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| 148 | Allocate buffers for partially transformed integrals
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| 149 | -----------------------------------------------------*/
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| 150 | double *ijsq_contrib; // local contributions to integral_ijsq
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| 151 | double *ijrq_contrib; // local contributions to integral_ijrq
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| 152 | double **rsiq_ints = new double*[num_te_types]; // quarter-transformed integrals for each RS pair
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| 153 | for(int te_type=0;te_type<num_te_types;te_type++) {
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| 154 | rsiq_ints[te_type] = new double[ni*nbasis2*nfuncmax3*nfuncmax4];
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| 155 | }
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| 156 | ijsq_contrib = mem->malloc_local_double(nbasis2*nfuncmax4);
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| 157 | if (bs3_eq_bs4)
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| 158 | ijrq_contrib = mem->malloc_local_double(nbasis2*nfuncmax4);
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| 159 | else
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| 160 | ijrq_contrib = NULL;
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| 161 |
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| 162 | /*-----------------------------
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| 163 | Initialize work distribution
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| 164 | -----------------------------*/
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| 165 | sc::DistShellPair shellpairs(msg,nthread_,mythread_,lock_,bs4,bs3,dynamic,
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| 166 | tform_->shell_pair_data());
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| 167 | shellpairs.set_debug(debug_);
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| 168 | if (debug_) shellpairs.set_print_percent(print_percent/10.0);
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| 169 | else shellpairs.set_print_percent(print_percent);
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| 170 | int work_per_thread = bs3_eq_bs4 ?
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| 171 | ((nsh3*(nsh3+1))/2)/(nproc*nthread_) :
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| 172 | (nsh3*nsh4)/(nproc*nthread_) ;
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| 173 | int print_interval = work_per_thread/100;
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| 174 | int time_interval = work_per_thread/10;
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| 175 | int print_index = 0;
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| 176 | if (print_interval == 0) print_interval = 1;
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| 177 | if (time_interval == 0) time_interval = 1;
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| 178 | if (work_per_thread == 0) work_per_thread = 1;
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| 179 |
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| 180 | if (debug_) {
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| 181 | lock_->lock();
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| 182 | ExEnv::outn() << scprintf("%d:%d: starting get_task loop",me,mythread_) << endl;
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| 183 | lock_->unlock();
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| 184 | }
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| 185 |
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| 186 | Ref<GenPetite4> p4list
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| 187 | = construct_gpetite(bs1,bs2,bs3,bs4);
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| 188 |
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| 189 | #if FAST_BUT_WRONG
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| 190 | for(int te_type=0;te_type<num_te_types;te_type++) {
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| 191 | bzerofast(rsiq_ints[te_type], ni*nbasis2*nfuncmax3*nfuncmax4);
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| 192 | bzerofast(ijsq_contrib[te_type], nbasis2*nfuncmax4);
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| 193 | if (bs3_eq_bs4)
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| 194 | bzerofast(ijrq_contrib[te_type], nbasis2*nfuncmax4);
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| 195 | }
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| 196 | #endif
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| 197 |
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| 198 | int R = 0;
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| 199 | int S = 0;
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| 200 | while (shellpairs.get_task(S,R)) {
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| 201 | // if bs3_eq_bs4 then S >= R always (see sc::exp::DistShellPair)
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| 202 | int nr = bs3->shell(R).nfunction();
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| 203 | int r_offset = bs3->shell_to_function(R);
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| 204 |
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| 205 | int ns = bs4->shell(S).nfunction();
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| 206 | int s_offset = bs4->shell_to_function(S);
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| 207 |
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| 208 | int nrs = nr*ns;
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| 209 |
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| 210 | if (debug_ > 1 && (print_index++)%print_interval == 0) {
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| 211 | lock_->lock();
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| 212 | ExEnv::outn() << scprintf("%d:%d: (PQ|%d %d) %d%%",
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| 213 | me,mythread_,R,S,(100*print_index)/work_per_thread)
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| 214 | << endl;
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| 215 | lock_->unlock();
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| 216 | }
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| 217 | if (debug_ > 1 && (print_index)%time_interval == 0) {
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| 218 | lock_->lock();
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| 219 | ExEnv::outn() << scprintf("timer for %d:%d:",me,mythread_) << endl;
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| 220 | timer_->print();
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| 221 | lock_->unlock();
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| 222 | }
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| 223 |
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| 224 | #if !FAST_BUT_WRONG
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| 225 | // Zero out 1 q.t. storage
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| 226 | for(int te_type=0;te_type<num_te_types;te_type++)
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| 227 | bzerofast(rsiq_ints[te_type], nrs*ni*nbasis2);
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| 228 |
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| 229 | for (int P=0; P<nsh1; P++) {
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| 230 | int np = bs1->shell(P).nfunction();
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| 231 | int p_offset = bs1->shell_to_function(P);
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| 232 |
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| 233 | int Qmax = (bs1_eq_bs2 ? P : nsh2-1);
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| 234 | for (int Q=0; Q<=Qmax; Q++) {
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| 235 | int nq = bs2->shell(Q).nfunction();
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| 236 | int q_offset = bs2->shell_to_function(Q);
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| 237 |
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| 238 | // check if symmetry unique and compute degeneracy
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| 239 | int deg = p4list->in_p4(P,Q,R,S);
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| 240 | if (deg == 0)
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| 241 | continue;
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| 242 | double symfac = (double) deg;
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| 243 |
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| 244 | if (tbint_->log2_shell_bound(P,Q,R,S) < tol_) {
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| 245 | continue; // skip shell quartets less than tol
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| 246 | }
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| 247 |
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| 248 | aoint_computed_++;
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| 249 |
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| 250 | timer_->enter("AO integrals");
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| 251 | tbint_->compute_shell(P,Q,R,S);
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| 252 | timer_->exit("AO integrals");
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| 253 |
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| 254 | timer_->enter("1. q.t.");
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| 255 |
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| 256 | // Begin first quarter transformation;
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| 257 | // generate (iq|rs) for i active
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| 258 | // if bs1_eq_bs2 then (ip|rs) are also generated
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| 259 | // store the integrals as rsiq
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| 260 | for(int te_type=0; te_type<num_te_types; te_type++) {
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| 261 | const double *pqrs_ptr = intbuf[te_type];
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| 262 |
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| 263 | for (int bf1 = 0; bf1 < np; bf1++) {
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| 264 | int p = p_offset + bf1;
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| 265 | int qmax = (bs1_eq_bs2 && P == Q) ? bf1 : nq-1;
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| 266 |
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| 267 | for (int bf2 = 0; bf2 <= qmax; bf2++) {
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| 268 | int q = q_offset + bf2;
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| 269 |
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| 270 | for (int bf3 = 0; bf3 < nr; bf3++) {
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| 271 | int smin = (bs3_eq_bs4 && R == S) ? bf3 : 0;
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| 272 | pqrs_ptr += smin;
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| 273 |
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| 274 | for (int bf4 = smin; bf4 <ns; bf4++) {
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| 275 |
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| 276 | // Only transform integrals larger than the threshold
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| 277 | if (fabs(*pqrs_ptr) > dtol) {
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| 278 |
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| 279 | double* rsiq_ptr = &rsiq_ints[te_type][q + nbasis2*(0 + ni*(bf4 + ns*bf3))];
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| 280 | const double* c_pi = vector1[p] + i_offset_;
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| 281 |
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| 282 | double* rsip_ptr;
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| 283 | const double* c_qi;
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| 284 | if (bs1_eq_bs2) {
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| 285 | rsip_ptr = &rsiq_ints[te_type][p + nbasis2*(0 + ni*(bf4 + ns*bf3))];
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| 286 | c_qi = vector1[q] + i_offset_;
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| 287 | }
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| 288 |
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| 289 | double rsiq_int_contrib = *pqrs_ptr;
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| 290 | // multiply each integral by its symmetry degeneracy factor
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| 291 | rsiq_int_contrib *= symfac;
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| 292 |
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| 293 | if (bs1_eq_bs2) {
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| 294 |
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| 295 | double rsip_int_contrib = rsiq_int_contrib;
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| 296 | if (te_type == TwoBodyInt::r12t1)
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| 297 | rsip_int_contrib = -1.0*rsiq_int_contrib;
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| 298 |
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| 299 | if (p == q) {
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| 300 | for (int i=0; i<ni; i++) {
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| 301 | *rsiq_ptr += *c_pi++ * rsiq_int_contrib;
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| 302 | rsiq_ptr += nbasis2;
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| 303 | }
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| 304 | }
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| 305 | else {
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| 306 | // p != q
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| 307 | for (int i=0; i<ni; i++) {
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| 308 | *rsip_ptr += *c_qi++ * rsip_int_contrib;
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| 309 | rsip_ptr += nbasis2;
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| 310 | *rsiq_ptr += *c_pi++ * rsiq_int_contrib;
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| 311 | rsiq_ptr += nbasis2;
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| 312 | }
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| 313 | }
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| 314 |
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| 315 | }
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| 316 | else {
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| 317 |
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| 318 | for (int i=0; i<ni; i++) {
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| 319 | *rsiq_ptr += *c_pi++ * rsiq_int_contrib;
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| 320 | rsiq_ptr += nbasis2;
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| 321 | }
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| 322 |
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| 323 | } // endif bs1_eq_bs2
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| 324 | } // endif dtol
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| 325 |
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| 326 | pqrs_ptr++;
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| 327 | } // exit bf4 loop
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| 328 | } // exit bf3 loop
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| 329 | } // exit bf2 loop
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| 330 | pqrs_ptr += (nq - qmax - 1) * nrs;
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| 331 | } // exit bf1 loop
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| 332 | // end of first quarter transformation
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| 333 | }
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| 334 | timer_->exit("1. q.t.");
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| 335 |
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| 336 | } // exit P loop
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| 337 | } // exit Q loop
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| 338 | #endif // !FAST_BUT_WRONG
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| 339 |
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| 340 | #if PRINT1Q
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| 341 | {
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| 342 | lock_->lock();
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| 343 | for(int te_type=0; te_type<PRINT_NUM_TE_TYPES; te_type++) {
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| 344 | for (int i = 0; i<ni; i++) {
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| 345 | for (int q = 0; q<nbasis2; q++) {
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| 346 | for (int r = 0; r<nr; r++) {
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| 347 | int rr = r+r_offset;
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| 348 | for (int s = 0; s<ns; s++) {
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| 349 | int ss = s+s_offset;
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| 350 | double value = rsiq_ints[te_type][q+nbasis2*(i+ni*(s+ns*r))];
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| 351 | printf("1Q: type = %d (%d %d|%d %d) = %12.8f\n",
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| 352 | te_type,i+i_offset_,q,rr,ss,value);
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| 353 | }
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| 354 | }
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| 355 | }
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| 356 | }
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| 357 | }
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| 358 | lock_->unlock();
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| 359 | }
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| 360 | #endif
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| 361 |
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| 362 | const int niq = ni*nbasis2;
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| 363 |
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| 364 | timer_->enter("2. q.t.");
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| 365 | // Begin second quarter transformation;
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| 366 | // generate (iq|js) stored as ijsq (also generate (iq|jr), if needed)
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| 367 |
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| 368 | for(int te_type=0; te_type<num_te_types; te_type++) {
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| 369 | for (int i=0; i<ni; i++) {
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| 370 | for (int j=0; j<rank3; j++) {
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| 371 |
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| 372 | #if !FAST_BUT_WRONG
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| 373 | bzerofast(ijsq_contrib, nbasis2*ns);
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| 374 | if (bs3_eq_bs4)
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| 375 | bzerofast(ijrq_contrib, nbasis2*nr);
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| 376 |
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| 377 | int ij_proc = (i*rank3 + j)%nproc;
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| 378 | int ij_index = (i*rank3 + j)/nproc;
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| 379 | const size_t ijsq_start = (size_t)(num_te_types*ij_index + te_type) * memgrp_blksize;
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| 380 | const double *rsiq_ptr = rsiq_ints[te_type] + i*nbasis2;
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| 381 |
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| 382 | if (bs3_eq_bs4) {
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| 383 |
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| 384 | for (int bf3 = 0; bf3 < nr; bf3++) {
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| 385 | int r = r_offset + bf3;
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| 386 | int smin = (bs3_eq_bs4 && R == S) ? bf3 : 0;
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| 387 | rsiq_ptr += smin*niq;
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| 388 |
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| 389 | for (int bf4 = smin; bf4 <ns; bf4++, rsiq_ptr+=niq) {
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| 390 | int s = s_offset + bf4;
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| 391 |
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| 392 | // second quarter transform
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| 393 | // rs = js
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| 394 | // rs = jr
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| 395 |
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| 396 | double* ijsq_ptr = ijsq_contrib + bf4*nbasis2;
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| 397 | double* ijrq_ptr = ijrq_contrib + bf3*nbasis2;
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| 398 | const double* i_ptr = rsiq_ptr;
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| 399 |
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| 400 | const double c_rj = vector3[r][j];
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| 401 | const double c_sj = vector3[s][j];
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| 402 |
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| 403 | if (r != s) {
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| 404 | for (int q=0; q<nbasis2; q++) {
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| 405 |
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| 406 | double value = *i_ptr++;
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| 407 | *ijsq_ptr++ += c_rj * value;
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| 408 | *ijrq_ptr++ += c_sj * value;
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| 409 |
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| 410 | }
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| 411 | }
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| 412 | else {
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| 413 | for (int q=0; q<nbasis2; q++) {
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| 414 |
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| 415 | double value = *i_ptr++;
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| 416 | *ijsq_ptr++ += c_rj * value;
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| 417 |
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| 418 | }
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| 419 | }
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| 420 | }
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| 421 | }
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| 422 | }
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| 423 | else {
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| 424 |
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| 425 | for (int bf3 = 0; bf3 < nr; bf3++) {
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| 426 | int r= r_offset + bf3;
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| 427 | double* ijsq_ptr = ijsq_contrib;
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| 428 |
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| 429 | for (int bf4 = 0; bf4 <ns; bf4++, rsiq_ptr+=niq) {
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| 430 |
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| 431 | // second quarter transform
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| 432 | // rs = js
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| 433 | const double* i_ptr = rsiq_ptr;
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| 434 |
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| 435 | const double c_rj = vector3[r][j];
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| 436 |
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| 437 | for (int q=0; q<nbasis2; q++) {
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| 438 |
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| 439 | double value = *i_ptr++;
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| 440 | *ijsq_ptr++ += c_rj * value;
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| 441 |
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| 442 | }
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| 443 | }
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| 444 | }
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| 445 | }
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| 446 |
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| 447 | // We now have contributions to ijsq (and ijrq) for one pair i,j,
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| 448 | // all q, and s in S (r in R); send ijsq (and ijrq) to the node
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| 449 | // (ij_proc) which is going to have this ij pair
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| 450 | #endif // !FAST_BUT_WRONG
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| 451 |
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| 452 | // Sum the ijsq_contrib to the appropriate place
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| 453 | size_t ij_offset = (size_t)nbasis2*s_offset + ijsq_start;
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| 454 | mem->sum_reduction_on_node(ijsq_contrib,
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| 455 | ij_offset, ns*nbasis2, ij_proc);
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| 456 |
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| 457 | if (bs3_eq_bs4) {
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| 458 | size_t ij_offset = (size_t)nbasis2*r_offset + ijsq_start;
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| 459 | mem->sum_reduction_on_node(ijrq_contrib,
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| 460 | ij_offset, nr*nbasis2, ij_proc);
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| 461 | }
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| 462 |
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| 463 | } // endif j
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| 464 | } // endif i
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| 465 | } // endif te_type
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| 466 | timer_->exit("2. q.t.");
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| 467 |
|
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| 468 | } // exit while get_task
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| 469 |
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| 470 | if (debug_) {
|
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| 471 | lock_->lock();
|
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| 472 | ExEnv::outn() << scprintf("%d:%d: done with get_task loop",me,mythread_) << endl;
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| 473 | lock_->unlock();
|
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| 474 | }
|
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| 475 |
|
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| 476 | for(int te_type=0; te_type<num_te_types; te_type++) {
|
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| 477 | delete[] rsiq_ints[te_type];
|
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| 478 | }
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| 479 | delete[] rsiq_ints;
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| 480 | mem->free_local_double(ijsq_contrib);
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| 481 | if (bs3_eq_bs4)
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| 482 | mem->free_local_double(ijrq_contrib);
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| 483 | delete[] vector1[0]; delete[] vector1;
|
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| 484 | delete[] vector3[0]; delete[] vector3;
|
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| 485 | }
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| 486 |
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| 487 | ////////////////////////////////////////////////////////////////////////////
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| 488 |
|
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| 489 | // Local Variables:
|
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| 490 | // mode: c++
|
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| 491 | // c-file-style: "CLJ-CONDENSED"
|
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| 492 | // End:
|
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