// // hess.h // // Copyright (C) 1997 Limit Point Systems, Inc. // // Author: Curtis Janssen // Maintainer: LPS // // This file is part of the SC Toolkit. // // The SC Toolkit is free software; you can redistribute it and/or modify // it under the terms of the GNU Library General Public License as published by // the Free Software Foundation; either version 2, or (at your option) // any later version. // // The SC Toolkit is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU Library General Public License for more details. // // You should have received a copy of the GNU Library General Public License // along with the SC Toolkit; see the file COPYING.LIB. If not, write to // the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA. // // The U.S. Government is granted a limited license as per AL 91-7. // #ifndef _chemistry_molecule_hess_h #define _chemistry_molecule_hess_h #ifdef __GNUC__ #pragma interface #endif #include #include #include namespace sc { class MolecularEnergy; /** MolecularHessian is an abstract class that computes a molecule's second derivatives of the energy with respect to changes in the nuclear coordinates. */ class MolecularHessian: virtual public SavableState { protected: Ref mol_; RefSCDimension d3natom_; Ref matrixkit_; public: MolecularHessian(); /** The MolecularHessian KeyVal constructor is used to generate a MolecularHessian derivative object from the input. It reads the keywords below.
KeywordTypeDefaultDescription
moleculeMoleculenoneThe Molecule object.
*/ MolecularHessian(const Ref&); MolecularHessian(StateIn&); ~MolecularHessian(); void save_data_state(StateOut&); RefSCDimension d3natom(); Ref matrixkit() const { return matrixkit_; } /// Return the cartesian hessian. virtual RefSymmSCMatrix cartesian_hessian() = 0; /** Some MolecularHessian specializations require a molecular energy object. The default implementations of this ignores the argument. */ virtual void set_energy(const Ref &energy); /** This returns a MolecularEnergy object, if used by this specialization. Otherwise null is returned. */ virtual MolecularEnergy* energy() const; /** Find transformation matrix from cartesian to symmetry coordinates. */ static RefSCMatrix cartesian_to_symmetry(const Ref &m, Ref pg = 0, Ref kit = 0); /// Write the hessian in a simple text format. static void write_cartesian_hessian(const char *filename, const Ref &m, const RefSymmSCMatrix &hess); /// Read the hessian from a simple text format. static void read_cartesian_hessian(const char *filename, const Ref &m, const RefSymmSCMatrix &hess); }; /** ReadMolecularHessian is an implementation of MolecularHessian that reads the hessian from a file. */ class ReadMolecularHessian: public MolecularHessian { protected: char *filename_; public: /** The ReadMolecularHessian KeyVal constructor is used to generate a ReadMolecularHessian object from the input. It reads the keywords below.
KeywordTypeDefaultDescription
filenamestringbasename .hessThe name of the file from which the hessian is read.
*/ ReadMolecularHessian(const Ref&); ReadMolecularHessian(StateIn&); ~ReadMolecularHessian(); void save_data_state(StateOut&); /// Return the hessian in cartesian coordinates. RefSymmSCMatrix cartesian_hessian(); }; /** GuessMolecularHessian is an implementation of MolecularHessian that estimates the hessian based on the internal coordinates. */ class GuessMolecularHessian: public MolecularHessian { protected: Ref coor_; public: /** The GuessMolecularHessian KeyVal constructor is used to generate a GuessMolecularHessian object from the input. It reads the keywords below.
KeywordTypeDefaultDescription
coorMolecularCoornoneThis gives the MolecularCoor object that is used to generate the guess hessian. It does not have to be the same MolecularCoor object that is used to optimize the molecule.
*/ GuessMolecularHessian(const Ref&); GuessMolecularHessian(StateIn&); ~GuessMolecularHessian(); void save_data_state(StateOut&); /// Return the hessian in cartesian coordinates. RefSymmSCMatrix cartesian_hessian(); }; /** DiagMolecularHessian is an implementation of MolecularHessian that returns a hessian that is a diagonal matrix. */ class DiagMolecularHessian: public MolecularHessian { protected: double diag_; public: /** The DiagMolecularHessian KeyVal constructor is used to generate a DiagMolecularHessian object from the input. It reads the keywords below.
KeywordTypeDefaultDescription
diagdouble1.0Specifies the diagonal elements of the hessian.
*/ DiagMolecularHessian(const Ref&); DiagMolecularHessian(StateIn&); ~DiagMolecularHessian(); void save_data_state(StateOut&); /// Return the hessian in cartesian coordinates. RefSymmSCMatrix cartesian_hessian(); }; } #endif // Local Variables: // mode: c++ // c-file-style: "CLJ" // End: