| [0b990d] | 1 | //
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 | 2 | // fdhess.h
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 | 3 | //
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 | 4 | // Copyright (C) 1997 Limit Point Systems, Inc.
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 | 5 | //
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 | 6 | // Author: Curtis Janssen <cljanss@limitpt.com>
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 | 7 | // Maintainer: LPS
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 | 8 | //
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 | 9 | // This file is part of the SC Toolkit.
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 | 10 | //
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 | 11 | // The SC Toolkit is free software; you can redistribute it and/or modify
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 | 12 | // it under the terms of the GNU Library General Public License as published by
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 | 13 | // the Free Software Foundation; either version 2, or (at your option)
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 | 14 | // any later version.
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 | 15 | //
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 | 16 | // The SC Toolkit is distributed in the hope that it will be useful,
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 | 17 | // but WITHOUT ANY WARRANTY; without even the implied warranty of
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 | 18 | // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 | 19 | // GNU Library General Public License for more details.
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 | 20 | //
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 | 21 | // You should have received a copy of the GNU Library General Public License
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 | 22 | // along with the SC Toolkit; see the file COPYING.LIB.  If not, write to
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 | 23 | // the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA.
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 | 24 | //
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 | 25 | // The U.S. Government is granted a limited license as per AL 91-7.
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 | 26 | //
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 | 27 | 
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 | 28 | #ifndef _chemistry_molecule_fdhess_h
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 | 29 | #define _chemistry_molecule_fdhess_h
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 | 30 | 
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 | 31 | #ifdef __GNUC__
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 | 32 | #pragma interface
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 | 33 | #endif
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 | 34 | 
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 | 35 | #include <iostream>
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 | 36 | 
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 | 37 | #include <chemistry/molecule/hess.h>
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 | 38 | #include <chemistry/molecule/energy.h>
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 | 39 | 
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 | 40 | namespace sc {
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 | 41 | 
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 | 42 | /** Computes the molecular hessian by finite displacements of gradients.
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 | 43 |     This will use the minimum number of displacements, each in the
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 | 44 |     highest possible point group. */
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 | 45 | class FinDispMolecularHessian: public MolecularHessian {
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 | 46 |   protected:
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 | 47 |     Ref<MolecularEnergy> mole_;
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 | 48 |     // In case molecule must be given in lower symmetry, its actual
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 | 49 |     // symmetry and the symmetry used to compute displacements is this
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 | 50 |     Ref<PointGroup> displacement_point_group_;
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 | 51 |     // The molecule's original point group for restoration at the end.
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 | 52 |     Ref<PointGroup> original_point_group_;
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 | 53 |     // The molecule's original geometry for restoration at the end and
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 | 54 |     //computing displacements.
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 | 55 |     RefSCVector original_geometry_;
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 | 56 |     // the cartesian displacement size in bohr
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 | 57 |     double disp_;
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 | 58 |     // the accuracy for gradient calculations
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 | 59 |     double accuracy_;
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 | 60 |     // the number of completed displacements
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 | 61 |     int ndisp_;
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 | 62 |     // the number of irreps in the displacement point group
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 | 63 |     int nirrep_;
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 | 64 |     // whether or not to attempt a restart
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 | 65 |     int restart_;
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 | 66 |     // the name of the restart file
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 | 67 |     char *restart_file_;
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 | 68 |     // whether or not to checkpoint
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 | 69 |     int checkpoint_;
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 | 70 |     // the name of the checkpoint file
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 | 71 |     char *checkpoint_file_;
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 | 72 |     // only do the totally symmetric displacements
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 | 73 |     int only_totally_symmetric_;
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 | 74 |     // eliminate the cubic terms by doing an extra displacement for
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 | 75 |     //each of the totally symmetry coordinates
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 | 76 |     int eliminate_cubic_terms_;
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 | 77 |     // use the gradient at the initial geometry to remove first order terms
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 | 78 |     // (important if not at equilibrium geometry)
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 | 79 |     int do_null_displacement_;
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 | 80 |     // print flag
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 | 81 |     int debug_;
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 | 82 |     // a basis for the symmetrized cartesian coordinates
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 | 83 |     RefSCMatrix symbasis_;
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 | 84 |     // the gradients at each of the displacements
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 | 85 |     RefSCVector *gradients_;
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 | 86 | 
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 | 87 |     void get_disp(int disp, int &irrep, int &index, double &coef);
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 | 88 |     void do_hess_for_irrep(int irrep,
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 | 89 |                            const RefSymmSCMatrix &dhessian,
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 | 90 |                            const RefSymmSCMatrix &xhessian);
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 | 91 |     void init();
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 | 92 |     void restart();
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 | 93 |   public:
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 | 94 |     FinDispMolecularHessian(const Ref<MolecularEnergy>&);
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 | 95 |     /** The FinDispMolecularHessian KeyVal constructor is used to generate a
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 | 96 |         FinDispMolecularHessian object from the input.  It reads the keywords
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 | 97 |         below.
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 | 98 | 
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 | 99 |         <table border="1">
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 | 100 | 
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 | 101 |         <tr><td>Keyword<td>Type<td>Default<td>Description
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 | 102 | 
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 | 103 |         <tr><td><tt>energy</tt><td>MolecularEnergy<td>none<td>This gives an
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 | 104 |         object which will be used to compute the gradients needed to form
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 | 105 |         the hessian.  If this is not specified, the object using
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 | 106 |         FinDispMolecularHessian will, in some cases, fill it in
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 | 107 |         appropriately.  However, even in these cases, it may be desirable
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 | 108 |         to specify this keyword.  For example, this could be used in an
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 | 109 |         optimization to compute frequencies using a lower level of theory.
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 | 110 | 
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 | 111 |         <tr><td><tt>debug</tt><td>boolean<td>false<td>If true,
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 | 112 |         print out debugging information.
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 | 113 | 
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 | 114 |         <tr><td><tt>point_group</tt><td>PointGroup<td>none<td>
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 | 115 |         The point group to use for generating the displacements.
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 | 116 | 
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 | 117 |         <tr><td><tt>restart</tt><td>boolean<td>true<td>If true, and a
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 | 118 |         checkpoint file exists, restart from that file.
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 | 119 | 
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 | 120 |         <tr><td><tt>restart_file</tt><td>string
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 | 121 |         <td><em>basename</em><tt>.ckpt.hess</tt><td>The name of
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 | 122 |         the file where checkpoint information is written to or read from.
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 | 123 | 
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 | 124 |         <tr><td><tt>checkpoint</tt><td>boolean<td>true<td>If true,
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 | 125 |         checkpoint intermediate data.
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 | 126 | 
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 | 127 |         <tr><td><tt>only_totally_symmetric</tt><td>boolean<td>false
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 | 128 |         <td>If true, only follow totally symmetric displacments.  The
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 | 129 |         hessian will not be complete, but it has enough information
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 | 130 |         to use it in a geometry optimization.
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 | 131 | 
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 | 132 |         <tr><td><tt>eliminate_cubic_terms</tt><td>boolean<td>true<td>
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 | 133 |         If true, then cubic terms will be eliminated.  This requires
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 | 134 |         that two displacements are done for each totally symmetric
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 | 135 |         coordinate, rather than one.  Setting this to false will reduce
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 | 136 |         the accuracy, but the results will still probably be accurate
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 | 137 |         enough for a geometry optimization.
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 | 138 | 
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 | 139 |         <tr><td><tt>do_null_displacement</tt><td>boolean<td>true<td>Run
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 | 140 |         the calculation at the given geometry as well.
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 | 141 | 
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 | 142 |         <tr><td><tt>displacement</tt><td>double<td>1.0e-2<td>The size of
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 | 143 |         the displacement in Bohr.
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 | 144 | 
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 | 145 |         <tr><td><tt>gradient_accuracy</tt><td>double<td><tt>displacement</tt>
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 | 146 |         / 1000<td>The accuracy to which the gradients will be computed.
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 | 147 | 
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 | 148 |         </table>
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 | 149 |     */
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 | 150 |     FinDispMolecularHessian(const Ref<KeyVal>&);
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 | 151 |     FinDispMolecularHessian(StateIn&);
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 | 152 |     ~FinDispMolecularHessian();
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 | 153 |     void save_data_state(StateOut&);
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 | 154 | 
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 | 155 |     /** These members are used to compute a cartesian hessian from
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 | 156 |         gradients at finite displacements. */
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 | 157 |     RefSymmSCMatrix compute_hessian_from_gradients();
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 | 158 |     int ndisplace() const;
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 | 159 |     int ndisplacements_done() const { return ndisp_; }
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 | 160 |     RefSCMatrix displacements(int irrep) const;
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 | 161 |     void displace(int disp);
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 | 162 |     void original_geometry();
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 | 163 |     void set_gradient(int disp, const RefSCVector &grad);
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 | 164 |     void checkpoint_displacements(StateOut&);
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 | 165 |     void restore_displacements(StateIn&);
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 | 166 | 
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 | 167 |     /** This returns the cartesian hessian.  If it has not yet been
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 | 168 |         computed, it will be computed by finite displacements. */
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 | 169 |     RefSymmSCMatrix cartesian_hessian();
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 | 170 | 
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 | 171 |     /// Set checkpoint option.
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 | 172 |     void set_checkpoint(int c) { checkpoint_ = c; }
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 | 173 |     /// Return the current value of the checkpoint option.
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 | 174 |     int checkpoint() const { return checkpoint_; }
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 | 175 | 
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 | 176 |     void set_energy(const Ref<MolecularEnergy> &energy);
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 | 177 |     MolecularEnergy* energy() const;
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 | 178 | 
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 | 179 |     Ref<SCMatrixKit> matrixkit() const { return mole_->matrixkit(); }
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 | 180 |     RefSCDimension d3natom() const { return mole_->moldim(); }
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 | 181 | };
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 | 182 | 
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 | 183 | }
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 | 184 | 
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 | 185 | #endif
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 | 186 | 
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 | 187 | // Local Variables:
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 | 188 | // mode: c++
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 | 189 | // c-file-style: "CLJ"
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 | 190 | // End:
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