Action_Thermostats
Add_AtomRandomPerturbation
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_StructOpt_integration_tests
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_ChronosMutex
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
GeometryObjects
Gui_displays_atomic_force_velocity
IndependentFragmentGrids_IntegrationTest
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
RotateToPrincipalAxisSystem_UndoRedo
StoppableMakroAction
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
ThirdParty_MPQC_rebuilt_buildsystem
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
Ubuntu_1604_changes
stable
Rev | Line | |
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[0b990d] | 1 | % emacs should use -*- KeyVal -*- mode
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| 2 | % molecule specification
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| 3 | molecule<Molecule>: (
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| 4 | symmetry = CS
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| 5 | { atoms geometry } = {
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| 6 | H [ 3.045436 -0.697438 -1.596748 ]
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| 7 | H [ 3.045436 -0.697438 1.596748 ]
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| 8 | N [ 2.098157 -0.482779 -0.000000 ]
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| 9 | C [ -0.582616 -0.151798 0.000000 ]
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| 10 | H [ -1.171620 1.822306 0.000000 ]
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| 11 | H [ -1.417337 -1.042238 -1.647529 ]
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| 12 | H [ -1.417337 -1.042238 1.647529 ]
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| 13 | }
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| 14 | )
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| 15 | % basis set specification
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| 16 | basis<GaussianBasisSet>: (
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| 17 | name = "4-31G*"
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| 18 | molecule = $:molecule
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| 19 | )
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| 20 | mpqc: (
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| 21 | checkpoint = no
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| 22 | savestate = no
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| 23 | % molecular coordinates for optimization
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| 24 | coor<SymmMolecularCoor>: (
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| 25 | molecule = $:molecule
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| 26 | generator<IntCoorGen>: (
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| 27 | molecule = $:molecule
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| 28 | )
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| 29 | followed<OutSimpleCo> = [ "N-inversion" 4 3 2 1 ]
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| 30 | )
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| 31 | % method for computing the molecule's energy
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| 32 | mole<CLHF>: (
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| 33 | molecule = $:molecule
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| 34 | basis = $:basis
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| 35 | coor = $..:coor
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| 36 | memory = 16000000
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| 37 | )
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| 38 | % optimizer object for the molecular geometry
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| 39 | opt<EFCOpt>: (
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| 40 | transition_state = yes
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| 41 | mode_following = yes
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| 42 | max_iterations = 20
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| 43 | function = $..:mole
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| 44 | update<PowellUpdate>: ()
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| 45 | convergence<MolEnergyConvergence>: (
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| 46 | cartesian = yes
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| 47 | energy = $..:..:mole
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| 48 | )
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| 49 | )
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| 50 | )
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| 51 |
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| 52 | basis:(
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| 53 | hydrogen: "4-31G*": [
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| 54 | (type: [am = s]
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| 55 | {exp coef:0} = {
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| 56 | 18.73113700 0.03349460
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| 57 | 2.82539440 0.23472690
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| 58 | 0.64012170 0.81375730
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| 59 | })
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| 60 | (type: [am = s]
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| 61 | {exp coef:0} = {
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| 62 | 0.16127780 1.00000000
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| 63 | })
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| 64 | ]
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| 65 | carbon: "4-31G*": [
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| 66 | (type: [am = s]
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| 67 | {exp coef:0} = {
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| 68 | 486.96693000 0.01772580
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| 69 | 73.37109400 0.12347870
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| 70 | 16.41345800 0.43387540
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| 71 | 4.34498360 0.56150420
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| 72 | })
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| 73 | (type: [am = p am = s]
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| 74 | {exp coef:1 coef:0} = {
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| 75 | 8.67352530 -0.12138370 0.06354540
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| 76 | 2.09661930 -0.22733850 0.29826780
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| 77 | 0.60465130 1.18517390 0.76210320
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| 78 | })
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| 79 | (type: [am = p am = s]
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| 80 | {exp coef:1 coef:0} = {
|
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| 81 | 0.18355780 1.00000000 1.00000000
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| 82 | })
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| 83 | (type: [am = d]
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| 84 | {exp coef:0} = {
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| 85 | 0.80000000 1.00000000
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| 86 | })
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| 87 | ]
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| 88 | nitrogen: "4-31G*": [
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| 89 | (type: [am = s]
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| 90 | {exp coef:0} = {
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| 91 | 671.27950000 0.01759825
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| 92 | 101.20170000 0.12284624
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| 93 | 22.69997000 0.43378214
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| 94 | 6.04060900 0.56141822
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| 95 | })
|
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| 96 | (type: [am = p am = s]
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| 97 | {exp coef:1 coef:0} = {
|
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| 98 | 12.39359970 -0.11748930 0.06402034
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| 99 | 2.92238280 -0.21399402 0.31120256
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| 100 | 0.83252808 1.17450211 0.75274824
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| 101 | })
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| 102 | (type: [am = p am = s]
|
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| 103 | {exp coef:1 coef:0} = {
|
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| 104 | 0.22596400 1.00000000 1.00000000
|
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| 105 | })
|
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| 106 | (type: [am = d]
|
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| 107 | {exp coef:0} = {
|
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| 108 | 0.80000000 1.00000000
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| 109 | })
|
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| 110 | ]
|
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| 111 | )
|
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