Action_Thermostats
Add_AtomRandomPerturbation
Add_SelectAtomByNameAction
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_StructOpt_integration_tests
AutomationFragmentation_failures
Candidate_v1.6.1
ChangeBugEmailaddress
ChemicalSpaceEvaluator
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph_documentation
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
ForceAnnealing_oldresults
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
Gui_displays_atomic_force_velocity
IndependentFragmentGrids_IntegrationTest
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
RotateToPrincipalAxisSystem_UndoRedo
StoppableMakroAction
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
| Line | |
|---|
| 1 | This directory contains a matlab MEX interface to levmar. This interface
|
|---|
| 2 | has been tested with Matlab v. 6.5 R13 under linux and v. 7.4 R2007 under Windows.
|
|---|
| 3 | Users have also reported success with GNU Octave.
|
|---|
| 4 |
|
|---|
| 5 | FILES
|
|---|
| 6 | The following files are included:
|
|---|
| 7 | levmar.c: C MEX-file for levmar
|
|---|
| 8 | Makefile: UNIX makefile for compiling levmar.c using mex
|
|---|
| 9 | Makefile.w32: Windows makefile for compiling levmar.c using mex
|
|---|
| 10 | levmar.m: Documentation for the MEX interface
|
|---|
| 11 | lmdemo.m: Demonstration of using the MEX interface; run as matlab < lmdemo.m
|
|---|
| 12 |
|
|---|
| 13 | *.m: Matlab functions implementing various objective functions and their Jacobians.
|
|---|
| 14 | For instance, meyer.m implements the objective function for Meyer's (reformulated)
|
|---|
| 15 | problem and jacmeyer.m implements its Jacobian.
|
|---|
| 16 |
|
|---|
| 17 |
|
|---|
| 18 |
|
|---|
| 19 | COMPILING
|
|---|
| 20 | Use the provided Makefile or Makefile.w32, depending on your platform.
|
|---|
| 21 | Alternatively, levmar.c can be compiled from matlab's prompt with a
|
|---|
| 22 | command like
|
|---|
| 23 |
|
|---|
| 24 | mex -DHAVE_LAPACK -I.. -O -L<levmar library dir> -L<blas/lapack libraries dir> levmar.c -llevmar -lclapack -lblas -lf2c
|
|---|
| 25 |
|
|---|
| 26 | Make sure that you substitute the angle brackets with the correct paths to
|
|---|
| 27 | the levmar and the blas/lapack directories. Also, on certain systems,
|
|---|
| 28 | -lf2c should be changed to -llibF77 -llibI77
|
|---|
| 29 | If your mex compiler has not been configured, the following command should be run first:
|
|---|
| 30 |
|
|---|
| 31 | mex -setup
|
|---|
| 32 |
|
|---|
| 33 |
|
|---|
| 34 | TESTING
|
|---|
| 35 | After compiling, execute lmdemo.m with matlab < lmdemo.m
|
|---|
Note:
See
TracBrowser
for help on using the repository browser.
